View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13497_low_3 (Length: 446)
Name: NF13497_low_3
Description: NF13497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13497_low_3 |
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| [»] scaffold0393 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 78 - 436
Target Start/End: Complemental strand, 30598834 - 30598458
Alignment:
| Q |
78 |
aagttctggaaccctggcaactaatatagctactaacttactaacatttgcatattcaacaaacatgatgcattagacattttaaggaataatgtataaa |
177 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
30598834 |
aagttctggaaccctggcaactaatataactactaacttactaacatttgcatattcaacaaacatgatgcattaggcattttaaggaataatgtatgaa |
30598735 |
T |
|
| Q |
178 |
gttgataaccgccaatgttgaataacaaaagggctatagtttggatagcaacaaagctaattcctcatcagataccttgacttcaatctatgatccaaat |
277 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30598734 |
gttgataaccgccaatgttgagtaacaaaagggctatagtttggatagcaacaaagctaattcctcatcagataccttgacttcaatctatgatcctaat |
30598635 |
T |
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| Q |
278 |
tatgcagcaa------------------gtttacactgaaaaacacacgcacacatacaatgtacatttattgtatacttcagcttagagtgataagaat |
359 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30598634 |
tatgcagcaaatcttgcagctaattgatgtttacactgaaaaacacacgcacacatacaatgcacatttattgtatacttcagcttagagtgataagaat |
30598535 |
T |
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| Q |
360 |
gcttataattaattgaataagaaaaataaaaacacaacaagaaagtgtatggccttacacagagttgttcccctttg |
436 |
Q |
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| T |
30598534 |
gcttataattaattgaataagaaaaataaaaacacagcaagaaagtgtatggccttacacagagttgttcccctttg |
30598458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 30598865 - 30598830
Alignment:
| Q |
20 |
agctcgaccggggagccaagagacattgaagaagtt |
55 |
Q |
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| T |
30598865 |
agctcgaccggggagccaagagacattgaagaagtt |
30598830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 2411140 - 2410958
Alignment:
| Q |
20 |
agctcgaccggggagccaagagacattgaagaagttttaagaatgacatccagagttcaagttctggaaccctggcaactaatatagctactaacttact |
119 |
Q |
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||||||| ||| ||| |||| |||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |||||| ||| ||||||| ||||| |
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| T |
2411140 |
agctcgatcggtgagttaagaaacattgaagaagttttaaaaatgacatccagagtccaagctctggaaccctggaaactaacataactactaa-ttact |
2411042 |
T |
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| Q |
120 |
aacatttgcatattcaacaaacatgatgcatt-agacattttaaggaataatgtataaagttgataaccgccaatgttgaataa |
202 |
Q |
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| T |
2411041 |
aacacttgcatatgcaacaaacatgatgcattaaggcattttaaggaataacttatgaaggttttaaccgccaatgttgaataa |
2410958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 204 - 289
Target Start/End: Complemental strand, 2410672 - 2410587
Alignment:
| Q |
204 |
aaaagggctatagtttggatagcaacaaagctaattcctcatcagataccttgacttcaatctatgatccaaattatgcagcaagt |
289 |
Q |
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| T |
2410672 |
aaaagggctatattttagatagcaacaaagctaattcttcatcagataccttgacttcgacgtatgatcctaatgatgcagcaagt |
2410587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 433
Target Start/End: Complemental strand, 2410565 - 2410417
Alignment:
| Q |
293 |
cactgaaaaa-cacacgcacacatacaatgtacatttattgtatacttcagc-ttagagtga---taagaatgcttataattaattgaataagaa-aaat |
386 |
Q |
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| T |
2410565 |
cactgaaaaaacacacacacgcacacaatgcacattgattgtatacttcagcactagaatgatactaagaatgtttataatgaattgaatatgaagaaaa |
2410466 |
T |
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| Q |
387 |
aaaaacacaacaagaaagtg--tatggccttacacagagttgttcccct |
433 |
Q |
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| T |
2410465 |
taaaagacaacaaggaagtgtatatggtcttacacagagttgctcccct |
2410417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 37 - 202
Target Start/End: Complemental strand, 13504 - 13341
Alignment:
| Q |
37 |
aagagacattgaagaagttttaagaatgacatccagagttcaagttctggaaccctggcaactaatatagctactaacttactaacatttgcatattcaa |
136 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||| |||||||||||| |||||| || ||||| ||||||||||| | ||| | ||| |
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| T |
13504 |
aagagacattgaagaagtat-aagaatgacatccagagttcaagctctggaaccctgaaaactaacctaactactgacttactaaca--tacatgtccaa |
13408 |
T |
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| Q |
137 |
caaacatgatgcatt-agacattttaaggaataatgtataaagttgataaccgccaatgttgaataa |
202 |
Q |
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| T |
13407 |
caaacatgatgcattaaggcattttaaagaataatgtatgaagttgttaaccgccaatgttgaataa |
13341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 13056 - 12968
Alignment:
| Q |
198 |
aataacaaaagggctatagtttggatagcaacaaa-gctaattcctcatcagataccttgacttcaatctatgatccaaattatgcagc |
285 |
Q |
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||||| |||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||| | |||||||| ||| ||||||| |
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| T |
13056 |
aataataaaagggctatattttagatagcaacaaaagctaattcctcatcagataccttgacttcgacatatgatcctaatgatgcagc |
12968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 433
Target Start/End: Complemental strand, 12877 - 12794
Alignment:
| Q |
353 |
taagaatgcttataattaattgaataagaaaaata-aaaacacaacaagaaagtgtat--ggccttacacagagttgttcccct |
433 |
Q |
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|||||||| ||||||| ||||||||| ||| || | |||| |||||||| |||||||| || |||||||||||||| |||||| |
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| T |
12877 |
taagaatgtttataatgaattgaatatgaagaaaataaaagacaacaaggaagtgtatatggtcttacacagagttgctcccct |
12794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 202
Target Start/End: Original strand, 39960001 - 39960160
Alignment:
| Q |
38 |
agagacattgaagaagttttaagaatgacatccagagttcaagttctggaaccctggcaactaatatagctactaacttactaacatttgcatattcaac |
137 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| | |||||| || | |||| ||| ||| |||||||| ||| ||| |||| |
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| T |
39960001 |
agagacaccgaagaagttttaagaatgacatccagagttcaagctttggaacactagacactaccataactaataacttac------ttgactatccaac |
39960094 |
T |
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| Q |
138 |
aaacatgatgc-attagacattttaaggaataatgtataaagttgataaccgccaatgttgaataa |
202 |
Q |
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||||||||||| || || ||||| || |||||||||||||||||| |||| ||||||||| ||||| |
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| T |
39960095 |
aaacatgatgcaataaggcatttgaatgaataatgtataaagttgttaactgccaatgttaaataa |
39960160 |
T |
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