View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13497_low_5 (Length: 414)
Name: NF13497_low_5
Description: NF13497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13497_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 2982901 - 2983242
Alignment:
| Q |
1 |
tatttagaaactttgtttgttcattctttgataaacttttaaaaagtgactataaatattgatttaaaaggttcaatattgttacttgtataccattttg |
100 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
2982901 |
tatttagaaactttgtttgtttattctctgataaacttttaaaaagtgactacaaatattgattttaaaagttcaatattgttacttgtataccattttg |
2983000 |
T |
|
| Q |
101 |
ttctttttatcttcctgaaaatgatctattgcaagatttatgcactatcatactgatttaatgtgtgcttgtgttaagctggcttgctcaataaaagaaa |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
2983001 |
ttctttttatcttcttgaaaatgatctattgcaagatttatgcactatcatactgatttaatgtgtgcttgttttaagctagcttgctcaataaaagaaa |
2983100 |
T |
|
| Q |
201 |
tggaagactgaaggagatgcatgaagatggctgctctagatattaagagttttgattttgtgaatgattattagttaaatttcttttcttgttattgtgt |
300 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||||| |
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| T |
2983101 |
tggaagactgaaggagatgcgtgaagatggctgctctagatattaagagttttgactttctgaatgattataagttaactttcttttcttgttattgtgt |
2983200 |
T |
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| Q |
301 |
tattttgtacttgctcataaacaagagactgattgatcaagg |
342 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2983201 |
tattttgtacttgctcataaacatgagactgattgatcaagg |
2983242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 139 - 342
Target Start/End: Complemental strand, 2706448 - 2706245
Alignment:
| Q |
139 |
tatgcactatcatactgatttaatgtgtgcttgtgttaagctggcttgctcaataaaagaaatggaagactgaaggagatgcatgaagatggctgctcta |
238 |
Q |
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|||||| ||||||||| ||||||||||||||| |||||| || ||||||||||||||||||||||| ||||| | |||| ||||||||||||||||| |
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| T |
2706448 |
tatgcaatatcatactcatttaatgtgtgcttttgttaatctagcttgctcaataaaagaaatggaggactggaaaagatttgtgaagatggctgctcta |
2706349 |
T |
|
| Q |
239 |
gatattaagagttttgattttgtgaatgattattagttaaatttcttttcttgttattgtgttattttgtacttgctcataaacaagagactgattgatc |
338 |
Q |
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|||||| | |||| ||||| || ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
2706348 |
gatattcaagttttttattttctgcatgattattagttaattttcttttcttgtttttgtgttattttgtacttgctcataaacaagcgacctattgatc |
2706249 |
T |
|
| Q |
339 |
aagg |
342 |
Q |
| |
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|||| |
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| T |
2706248 |
aagg |
2706245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 232 - 342
Target Start/End: Complemental strand, 2708839 - 2708729
Alignment:
| Q |
232 |
tgctctagatatt-aagagttttgattttgtgaatgattattagttaaatttcttttcttgttattgtgttattttgtacttgctcataaacaagagact |
330 |
Q |
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||||||||||||| |||| |||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2708839 |
tgctctagatattcaagattttt-attttctgaatgattattagttaattttcttttcttgttattgtgttattttatacttgctcataaacaagagact |
2708741 |
T |
|
| Q |
331 |
gattgatcaagg |
342 |
Q |
| |
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|||||||||||| |
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|
| T |
2708740 |
gattgatcaagg |
2708729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 2992092 - 2992200
Alignment:
| Q |
122 |
tgatctattgcaagatttatgcactatcatactgatttaatgtgtgcttgtgttaagctggcttgctcaataaaagaaatggaagactgaaggagatgca |
221 |
Q |
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||||||||| ||| ||| || |||||||||||||||| ||||||| ||||||||||||| ||| ||||||||||||| ||||||||||| ||||||||| |
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| T |
2992092 |
tgatctattccaatattcatacactatcatactgattaaatgtgttcttgtgttaagctagctggctcaataaaagacatggaagactggaggagatgcg |
2992191 |
T |
|
| Q |
222 |
tgaagatgg |
230 |
Q |
| |
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||||||||| |
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|
| T |
2992192 |
tgaagatgg |
2992200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 2706549 - 2706500
Alignment:
| Q |
9 |
aactttgtttgttcattctttgataaacttttaaaaagtgactataaata |
58 |
Q |
| |
|
||||||| ||||||||||||||||||| || |||||| | |||||||||| |
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|
| T |
2706549 |
aactttggttgttcattctttgataaaattgtaaaaatttactataaata |
2706500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 148 - 285
Target Start/End: Complemental strand, 10753043 - 10752905
Alignment:
| Q |
148 |
tcatactgatttaatgtgtgcttgtgttaagctg-gcttgctcaataaaa-gaaatggaagactgaaggagatgcatgaagatggctgctctagatatta |
245 |
Q |
| |
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||||||||| | ||||||||||||| | ||||| |||||||| |||||| ||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
10753043 |
tcatactgaataaatgtgtgcttgtttgaagctaagcttgctcgataaaaagaaatggaagactgaagtagatgcgtgaagatggctgctctagatattt |
10752944 |
T |
|
| Q |
246 |
agagttttgattttgtgaatgattattagttaaatttctt |
285 |
Q |
| |
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| ||||||| |||| ||||||||||||||| || |||||| |
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| T |
10752943 |
a-agttttggttttctgaatgattattagtaaattttctt |
10752905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 18358472 - 18358580
Alignment:
| Q |
122 |
tgatctattgcaagatttatgcactatcatactgatttaatgtgtgcttgtgttaagctggcttgctcaataaaagaaatggaagactgaaggagatgca |
221 |
Q |
| |
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||||||||| ||| ||| || |||||||||||||||| ||| ||| ||||||||||||| ||| ||||||||||||| ||||||||||| ||||||||| |
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| T |
18358472 |
tgatctattccaatattcatacactatcatactgattaaatatgttcttgtgttaagctagctggctcaataaaagacatggaagactggaggagatgcg |
18358571 |
T |
|
| Q |
222 |
tgaagatgg |
230 |
Q |
| |
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||||||||| |
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|
| T |
18358572 |
tgaagatgg |
18358580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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