View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13497_low_7 (Length: 311)

Name: NF13497_low_7
Description: NF13497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13497_low_7
NF13497_low_7
[»] chr4 (11 HSPs)
chr4 (17-199)||(6770157-6770333)
chr4 (229-305)||(6770363-6770439)
chr4 (231-305)||(6625947-6626018)
chr4 (139-179)||(6501559-6501599)
chr4 (229-303)||(6812670-6812741)
chr4 (69-123)||(6549644-6549698)
chr4 (144-198)||(6626044-6626098)
chr4 (231-305)||(6549479-6549550)
chr4 (231-305)||(6647997-6648068)
chr4 (231-289)||(6716354-6716409)
chr4 (231-305)||(6749797-6749868)
[»] scaffold0552 (1 HSPs)
scaffold0552 (229-303)||(142-213)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 6770157 - 6770333
Alignment:
Q  17 actaaacaataatgaaatcagtttgatgacgtttggtttgataatcatcatgataacataggaagttaattagtatgactatgaattaaaaattaattac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  6770157 actaaacaataatgaaatcagtttgatgacgtttggtttgataatcatcatgataacataggaagtatattagtatgactatgaattaaaaattaattac 6770256  T
Q  117 aataaattgtaggtaatattaataacctcatagttaatgatgtatcaggggcatcaagaatttcagcaaccagatatctaaga 199  Q
    |||||||||||||      |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6770257 aataaattgtagg------taataacctcatagttaatgatgtataaggggcatcaagaatttcagcaaccagatatctaaga 6770333  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 6770363 - 6770439
Alignment:
Q  229 attgtttcagccaaagatatacgatgtgtacttcttgagttttagaggggtagacagtcgttcgaagttcatttcac 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6770363 attgtttcagccaaagatatacgatgtgtacttcttgagttttagaggggtagacaatcgttcgaagttcatttcac 6770439  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 305
Target Start/End: Complemental strand, 6626018 - 6625947
Alignment:
Q  231 tgtttcagccaaagatatacgatgtgtacttcttgagttttagaggggtagacagtcgttcgaagttcatttcac 305  Q
    ||||| |||||||||| ||||||||||   |||||||||| ||||||| |||||||||| | |||||||||||||    
T  6626018 tgttttagccaaagatgtacgatgtgt---tcttgagtttcagaggggaagacagtcgtgcaaagttcatttcac 6625947  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 6501599 - 6501559
Alignment:
Q  139 taacctcatagttaatgatgtatcaggggcatcaagaattt 179  Q
    ||||||||||||| |||||||||||| ||||||||||||||    
T  6501599 taacctcatagttgatgatgtatcagtggcatcaagaattt 6501559  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 6812670 - 6812741
Alignment:
Q  229 attgtttcagccaaagatatacgatgtgtacttcttgagttttagaggggtagacagtcgttcgaagttcatttc 303  Q
    |||||||||||| ||||| |||||||||    ||||||||||||||||||  ||||||||| |||| ||||||||    
T  6812670 attgtttcagccgaagatgtacgatgtga---tcttgagttttagaggggatgacagtcgtgcgaaattcatttc 6812741  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 6549698 - 6549644
Alignment:
Q  69 ataacataggaagttaattagtatgactatgaattaaaaattaattacaataaat 123  Q
    |||||||  |||||||||||||||||||||| ||| ||||||| | |||||||||    
T  6549698 ataacatcagaagttaattagtatgactatggattgaaaattattaacaataaat 6549644  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 6626098 - 6626044
Alignment:
Q  144 tcatagttaatgatgtatcaggggcatcaagaatttcagcaaccagatatctaag 198  Q
    ||||||||||||||| ||||| ||| ||||||||||||| ||| | |||||||||    
T  6626098 tcatagttaatgatgcatcagtggcctcaagaatttcaggaacaatatatctaag 6626044  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 305
Target Start/End: Complemental strand, 6549550 - 6549479
Alignment:
Q  231 tgtttcagccaaagatatacgatgtgtacttcttgagttttagaggggtagacagtcgttcgaagttcatttcac 305  Q
    |||||||||||||||| ||||| ||   ||||||||||||  |||||| ||| |||||| |||| ||||||||||    
T  6549550 tgtttcagccaaagatgtacgacgt---cttcttgagtttccgaggggaagatagtcgtgcgaaattcatttcac 6549479  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 305
Target Start/End: Original strand, 6647997 - 6648068
Alignment:
Q  231 tgtttcagccaaagatatacgatgtgtacttcttgagttttagaggggtagacagtcgttcgaagttcatttcac 305  Q
    |||||||||| ||| | ||||||||||   |||||||||||||||||| |||||| ||| | |||||||| ||||    
T  6647997 tgtttcagccgaagctgtacgatgtgt---tcttgagttttagaggggaagacagccgtgcaaagttcatgtcac 6648068  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 6716354 - 6716409
Alignment:
Q  231 tgtttcagccaaagatatacgatgtgtacttcttgagttttagaggggtagacagtcgt 289  Q
    |||||||||||||||| |||||||||   ||||||||||| ||||||| ||||| ||||    
T  6716354 tgtttcagccaaagatgtacgatgtg---ttcttgagtttcagaggggaagacaatcgt 6716409  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 305
Target Start/End: Original strand, 6749797 - 6749868
Alignment:
Q  231 tgtttcagccaaagatatacgatgtgtacttcttgagttttagaggggtagacagtcgttcgaagttcatttcac 305  Q
    |||||||||||||||| |||||||||   ||||||||||| ||||| |  ||||||||| | || ||||||||||    
T  6749797 tgtttcagccaaagatgtacgatgtg---ttcttgagtttcagaggagacgacagtcgtgcaaaattcatttcac 6749868  T

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Target: scaffold0552 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 142 - 213
Alignment:
Q  229 attgtttcagccaaagatatacgatgtgtacttcttgagttttagaggggtagacagtcgttcgaagttcatttc 303  Q
    |||||||||||| ||||| |||||||||    ||||||||||||||||||  ||||||||| |||| ||||||||    
T  142 attgtttcagccgaagatgtacgatgtga---tcttgagttttagaggggatgacagtcgtgcgaaattcatttc 213  T

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