View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13497_low_8 (Length: 236)
Name: NF13497_low_8
Description: NF13497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13497_low_8 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 87578 - 87361
Alignment:
| Q |
17 |
atagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgtgaccctgagggaagtaga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87578 |
atagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgtgaccctgagggaagtaga |
87479 |
T |
|
| Q |
117 |
agacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcacatttttaaatttcttctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
87478 |
agacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcacatttttcaatttcttctt |
87379 |
T |
|
| Q |
217 |
tgactccatattcatctc |
234 |
Q |
| |
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|||||||||||||||||| |
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| T |
87378 |
tgactccatattcatctc |
87361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 95590 - 95391
Alignment:
| Q |
21 |
cttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgtgaccctgagggaagtagaagac |
120 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
95590 |
cttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcacaagcatgctcggcgtgaccctgagggaagtaaaagac |
95491 |
T |
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| Q |
121 |
ctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcacatttttaaatttcttctttgac |
220 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||| |||||||| |||||| |
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| T |
95490 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatg--------------ccacactcttgttcacatttttcaatttcttttttgac |
95405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 40878705 - 40878922
Alignment:
| Q |
17 |
atagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgtgaccctgagggaagtaga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878705 |
atagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgtgaccctgagggaagtaga |
40878804 |
T |
|
| Q |
117 |
agacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcacatttttaaatttcttctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
40878805 |
agacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcacatttttcaatttcttctt |
40878904 |
T |
|
| Q |
217 |
tgactccatattcatctc |
234 |
Q |
| |
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|||||||||||||||||| |
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| T |
40878905 |
tgactccatattcatctc |
40878922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 234
Target Start/End: Original strand, 40870692 - 40870891
Alignment:
| Q |
21 |
cttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgtgaccctgagggaagtagaagac |
120 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40870692 |
cttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcacaagcatgctcggcgtgaccctgagggaagtaaaagac |
40870791 |
T |
|
| Q |
121 |
ctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcacatttttaaatttcttctttgac |
220 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||| |||||||| |||||| |
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| T |
40870792 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatg--------------ccacactcttgttcacatttttcaatttcttttttgac |
40870877 |
T |
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