View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13497_low_9 (Length: 216)

Name: NF13497_low_9
Description: NF13497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13497_low_9
NF13497_low_9
[»] chr8 (9 HSPs)
chr8 (1-144)||(2982519-2982662)
chr8 (14-109)||(3004622-3004717)
chr8 (1-106)||(2707759-2707864)
chr8 (1-105)||(2709014-2709118)
chr8 (51-115)||(3139900-3139964)
chr8 (8-112)||(3168048-3168152)
chr8 (51-115)||(3171533-3171597)
chr8 (1-102)||(2991588-2991692)
chr8 (63-113)||(2909011-2909061)
[»] chr1 (1 HSPs)
chr1 (5-145)||(10753369-10753509)
[»] chr7 (2 HSPs)
chr7 (51-114)||(7161798-7161861)
chr7 (8-114)||(3916874-3916980)
[»] chr6 (1 HSPs)
chr6 (63-102)||(18358071-18358110)


Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 2982519 - 2982662
Alignment:
Q  1 tacaaacttacataccttagaaatcattgaatgtccattcttagctcaacaatgtcagacagaaacaagtgcaacttggtctaaaattgctcacatccca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2982519 tacaaacttacataccttagaaatcattgaatgtccattcttagctcaacaatgtgagacagaaacaagtgcaacttggtctaaaattgctcacatccca 2982618  T
Q  101 aacataatcttaaaagaaagtctttgggattagaaaggtaccga 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2982619 aacataatcttaaaagaaagtctttgggattagaaaggtaccga 2982662  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 3004622 - 3004717
Alignment:
Q  14 accttagaaatcattgaatgtccattcttagctcaacaatgtcagacagaaacaagtgcaacttggtctaaaattgctcacatcccaaacataatc 109  Q
    ||||||||| ||||| |||||||| | |||| | || |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3004622 accttagaattcattaaatgtccacttttagttgaagaatgccagacagaaacaagtgcaatttggtctaaaattgctcacatcccaaacataatc 3004717  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 2707864 - 2707759
Alignment:
Q  1 tacaaacttacataccttagaaatcattgaatgtccattcttagctcaacaatgtcagacagaaacaagtgcaacttggtctaaaattgctcacatccca 100  Q
    |||||||||||||||||||||||||| |   |||||| |||||  | |  ||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  2707864 tacaaacttacataccttagaaatcaatagttgtccactcttaattgaggaatgtcagacaaaaacaagtgcaacttggtctaaaattgatcacatccca 2707765  T
Q  101 aacata 106  Q
    ||||||    
T  2707764 aacata 2707759  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 2709118 - 2709014
Alignment:
Q  1 tacaaacttacataccttagaaatcattgaatgtccattcttagctcaacaatgtcagacagaaacaagtgcaacttggtctaaaattgctcacatccca 100  Q
    |||||| |||||||||||||||||||||| ||||||| |||||  | |  ||||||||| |||| |||||| |||||| |||||||||||||||||||||    
T  2709118 tacaaaattacataccttagaaatcattggatgtccactcttaattgacgaatgtcagagagaagcaagtgtaacttgctctaaaattgctcacatccca 2709019  T
Q  101 aacat 105  Q
    |||||    
T  2709018 aacat 2709014  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 3139964 - 3139900
Alignment:
Q  51 aatgtcagacagaaacaagtgcaacttggtctaaaattgctcacatcccaaacataatcttaaaa 115  Q
    ||||| ||||| ||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  3139964 aatgtgagacacaaacaagtgcaacatgggcaaaaattgctcacatcccaaacataatcttaaaa 3139900  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 3168152 - 3168048
Alignment:
Q  8 ttacataccttagaaatcattgaatgtccattcttagctcaacaatgtcagacagaaacaagtgcaacttggtctaaaattgctcacatcccaaacataa 107  Q
    ||||||||| | |||||| ||| ||||||  |||||| | || |||||  |||| ||||||||||||| ||||| |||||| ||||||||||||||||||    
T  3168152 ttacataccctggaaatctttggatgtcccctcttagttgaagaatgtgtgacacaaacaagtgcaacatggtccaaaatttctcacatcccaaacataa 3168053  T
Q  108 tctta 112  Q
    |||||    
T  3168052 tctta 3168048  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 3171597 - 3171533
Alignment:
Q  51 aatgtcagacagaaacaagtgcaacttggtctaaaattgctcacatcccaaacataatcttaaaa 115  Q
    ||||| ||||| ||||||||||||| ||| | |||||||||||||| ||||||||||||||||||    
T  3171597 aatgtgagacacaaacaagtgcaacgtggcccaaaattgctcacattccaaacataatcttaaaa 3171533  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 2991588 - 2991692
Alignment:
Q  1 tacaaacttacataccttagaaatcattgaatgtccattcttag---ctcaacaatgtcagacagaaacaagtgcaacttggtctaaaattgctcacatc 97  Q
    |||||||||||| |||||||||||||||| |||| || ||||||   || |  |||  | |||||||||| |||||  ||||||||||||||||||||||    
T  2991588 tacaaacttacacaccttagaaatcattggatgttcaatcttagatactaatgaattcctgacagaaacaggtgcactttggtctaaaattgctcacatc 2991687  T
Q  98 ccaaa 102  Q
    |||||    
T  2991688 ccaaa 2991692  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 2909061 - 2909011
Alignment:
Q  63 aaacaagtgcaacttggtctaaaattgctcacatcccaaacataatcttaa 113  Q
    |||||| ||| |||||| | ||| |||||||||||||||||||||||||||    
T  2909061 aaacaaatgctacttggcccaaagttgctcacatcccaaacataatcttaa 2909011  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 10753509 - 10753369
Alignment:
Q  5 aacttacataccttagaaatcattgaatgtccattcttagctcaacaatgtcagacagaaacaagtgcaacttggtctaaaattgctcacatcccaaaca 104  Q
    |||||| | |||||||||||||||||||||||| |||||  | |  |||||  || |||||||||||||||  || ||||||| ||||||||||||||||    
T  10753509 aacttaaaaaccttagaaatcattgaatgtccactcttaattgaggaatgtttgagagaaacaagtgcaaccgggcctaaaatcgctcacatcccaaaca 10753410  T
Q  105 taatcttaaaagaaagtctttgggattagaaaggtaccgac 145  Q
    || ||||| || ||  |  |||| || ||||||||||||||    
T  10753409 tagtcttacaaaaattttattggcatgagaaaggtaccgac 10753369  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 7161798 - 7161861
Alignment:
Q  51 aatgtcagacagaaacaagtgcaacttggtctaaaattgctcacatcccaaacataatcttaaa 114  Q
    ||||| ||||| ||||||||||||| ||| ||||||||||||||||||||| ||||||||||||    
T  7161798 aatgtgagacacaaacaagtgcaacatggcctaaaattgctcacatcccaatcataatcttaaa 7161861  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 3916980 - 3916874
Alignment:
Q  8 ttacataccttagaaatcattgaatgtccattcttagctcaacaatgtcagacagaaacaagtgcaacttggtctaaaattgctcacatcccaaacataa 107  Q
    ||||| ||| |||||||||||  ||||||  |||||  | || ||||| ||||| ||||||||||||| |||   |||||| ||||||||||||||||||    
T  3916980 ttacagaccctagaaatcattcgatgtcccctcttaattgaagaatgtgagacacaaacaagtgcaacatggcacaaaatttctcacatcccaaacataa 3916881  T
Q  108 tcttaaa 114  Q
    |||||||    
T  3916880 tcttaaa 3916874  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 102
Target Start/End: Original strand, 18358071 - 18358110
Alignment:
Q  63 aaacaagtgcaacttggtctaaaattgctcacatcccaaa 102  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  18358071 aaacaggtgcaacttggtctaaaattgctcacatcccaaa 18358110  T

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