View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13498_high_1 (Length: 475)

Name: NF13498_high_1
Description: NF13498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13498_high_1
NF13498_high_1
[»] chr4 (5 HSPs)
chr4 (31-89)||(4843420-4843478)
chr4 (288-354)||(5155429-5155495)
chr4 (31-68)||(5172102-5172139)
chr4 (1-31)||(5159213-5159243)
chr4 (1-34)||(4843345-4843378)


Alignment Details
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 4843420 - 4843478
Alignment:
Q  31 tgcaaagagtattatgtggagagtggcaaaacatattttttcaaagaaagagataagtc 89  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4843420 tgcaaagagtattatgtggagagtggcaaaccatattttttcaaagaaagagataagtc 4843478  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 5155495 - 5155429
Alignment:
Q  288 gggaaacctacgagaaaggtgaaactgaagttcacgaaagcaaaattagggagcataaccctattct 354  Q
    |||||| | ||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  5155495 gggaaaaccacgaggaaggtgaaattgaagttcaagaaagcaaaattagggagcataaccctattct 5155429  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 5172139 - 5172102
Alignment:
Q  31 tgcaaagagtattatgtggagagtggcaaaacatattt 68  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5172139 tgcaaagagtattatgtggagagtggcaaaacatattt 5172102  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 5159243 - 5159213
Alignment:
Q  1 acaaaatcgataaccatctttggatgagaat 31  Q
    |||||||||||||||||||||||||||||||    
T  5159243 acaaaatcgataaccatctttggatgagaat 5159213  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 4843345 - 4843378
Alignment:
Q  1 acaaaatcgataaccatctttggatgagaatgca 34  Q
    ||||||||||||||||||||||||||| ||||||    
T  4843345 acaaaatcgataaccatctttggatgaaaatgca 4843378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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