View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13498_high_11 (Length: 410)
Name: NF13498_high_11
Description: NF13498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13498_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 23 - 377
Target Start/End: Original strand, 3214958 - 3215311
Alignment:
| Q |
23 |
catcatcaagagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctc |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3214958 |
catcatcaagagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctc |
3215057 |
T |
|
| Q |
123 |
aacaacagagataactggactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattgaagcaagattg |
222 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3215058 |
aacaacagagataactggactataaccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattgaagcaagattg |
3215157 |
T |
|
| Q |
223 |
tctataagattgcgagtacgaatgagatactcttgtaccgtacgattatcaaacgaggtagcgcgcaattcaacacgaatgttgtcttgcctttgcaagc |
322 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3215158 |
tctataagattgcgagtatgaatgagatactcttgcaccgtacgattatcaaacgaggtagcacgcaattcaacacgaa-gttgtcttgcctttgcaagc |
3215256 |
T |
|
| Q |
323 |
atctgcttttgaaaataggtcacaagtttgttctagagtttatacgcatgcgaag |
377 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3215257 |
atttgcttttgaaaataggtcacaagtttgttctagagtttatacgcatgcgaag |
3215311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 22 - 377
Target Start/End: Original strand, 32460471 - 32460826
Alignment:
| Q |
22 |
acatcatcaagagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactct |
121 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||| ||||||||||||| |||||| || |||||||| || |||||| ||||| || || | |
|
|
| T |
32460471 |
acatcatcaatagtcttcttcttgaacttgtcaagacgagtctcatgagcaattaacagagactctacctcatcaatatcaatagtgtcaaatttgcttt |
32460570 |
T |
|
| Q |
122 |
caacaacagagataactggactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattg-aagcaagat |
220 |
Q |
| |
|
||||||| || || ||||||||||| | |||||||||||||| ||||| |||||||| |||||| | | |||| ||||||| |||| | ||||||||| |
|
|
| T |
32460571 |
caacaactgaaatcactggactatactcttgtggtaaaccttctaaaattacatctaaatgctgagtaatgggaactggatcaccaatggaaagcaagat |
32460670 |
T |
|
| Q |
221 |
tgtctataagattgcgagtacgaatgagatactcttgtaccgtacgattatcaaacgaggtagcgcgcaattcaacacgaatgttgtcttgcctttgcaa |
320 |
Q |
| |
|
| || || | ||||||| | |||| |||| ||| ||||||||||||||||||| || |||| |||| ||||||||| | || |||||||||||| |
|
|
| T |
32460671 |
tatcaattaaattgcgaatgcgaagaagatgctcctgtaccgtacgattatcaagagaagtagaacgcagttcaacacgta-actgccttgcctttgcac |
32460769 |
T |
|
| Q |
321 |
gcatctgcttttgaaaataggtcacaagtttgttctagagtttatacgcatgcgaag |
377 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
32460770 |
gcatctgcttgtgaaaataggtcacaagtttgttccgaagttcatacgcatgcgaag |
32460826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 372
Target Start/End: Original strand, 36399448 - 36399779
Alignment:
| Q |
40 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacagagataactg |
139 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||| || ||||| ||||| || || | ||||||||||||||| || || || || ||||| ||||| | |
|
|
| T |
36399448 |
ttcttgaatttatcaagacgtgtttcatgagcaagaagaagagactcaacttcgtcaacgtcaataacatcaaatttgctttccactacagatataacag |
36399547 |
T |
|
| Q |
140 |
gactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattgaagcaagattgtctataagattgcgagt |
239 |
Q |
| |
|
||||| | | || ||||||||||| ||||| ||||| || || ||||| ||||||| |||||| | || || || ||||| || | ||||| ||| | |
|
|
| T |
36399548 |
gactaaaatcttgcggtaaaccttctaaaatcacatccaaatgttgattaacaggaactggatctcctatagaggctagattatcaacaagatcacgaat |
36399647 |
T |
|
| Q |
240 |
acgaatgagatactcttgtaccgtacgattatcaaacgaggtagcgcgcaattcaacacgaatgttgtcttgcctttgcaagcatctgcttttgaaaata |
339 |
Q |
| |
|
||||| ||||| || ||||||||| |||| ||| || |||| |||| |||||||| || |||| | ||||| ||| ||||||| || |||||||| |
|
|
| T |
36399648 |
acgaagaagataatcctgtaccgtaagatttgcaagagaagtagaacgcagttcaacactaa-gttgacgcgccttcgcacgcatctgtttgtgaaaata |
36399746 |
T |
|
| Q |
340 |
ggtcacaagtttgttctagagtttatacgcatg |
372 |
Q |
| |
|
| ||||||||| | | | |||| ||||||||| |
|
|
| T |
36399747 |
tgccacaagtttatcccaaagttcatacgcatg |
36399779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 52665850 - 52665923
Alignment:
| Q |
40 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaa |
113 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||| || ||||| ||||| || || ||||||||||||||||| |
|
|
| T |
52665850 |
ttcttgaatttatcaagacgtgtttcatgagcaagaagaagagactcaacttcgtcaatgtcaataacatcaaa |
52665923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 196
Target Start/End: Original strand, 24789296 - 24789452
Alignment:
| Q |
40 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacagagataactg |
139 |
Q |
| |
|
|||||||| || |||||||| |||||||||| || || ||||| ||||| || || | ||||||||||||||| || || || || ||| | |||| | |
|
|
| T |
24789296 |
ttcttgaatttatcaagacgtgtttcatgagtaagaagaagagactcaacttcgtcaacgtcaataacatcaaatttgctttccactacaaatataatag |
24789395 |
T |
|
| Q |
140 |
gactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaa |
196 |
Q |
| |
|
||||| | | |||||||||||||| ||||| ||||| || || ||||| ||||||| |
|
|
| T |
24789396 |
gactaaaatcttgtggtaaaccttctaaaatcacatccaaatgttgattaacaggaa |
24789452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University