View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13498_high_15 (Length: 372)

Name: NF13498_high_15
Description: NF13498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13498_high_15
NF13498_high_15
[»] chr6 (3 HSPs)
chr6 (20-365)||(17075410-17075755)
chr6 (147-365)||(11053484-11053702)
chr6 (21-151)||(11064036-11064166)
[»] chr8 (3 HSPs)
chr8 (21-282)||(17683905-17684166)
chr8 (36-199)||(36159902-36160065)
chr8 (314-365)||(17684198-17684249)
[»] chr4 (2 HSPs)
chr4 (23-286)||(10559739-10560002)
chr4 (309-365)||(10558434-10558490)
[»] chr1 (1 HSPs)
chr1 (21-364)||(26741535-26741878)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 9e-89; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 20 - 365
Target Start/End: Complemental strand, 17075755 - 17075410
Alignment:
Q  20 gacatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctc 119  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||| ||| ||| |    
T  17075755 gacatcatcaaacacaaccttctcatttccatgcactgccacccaattaacccaatcattgttaacggaccccgatgacgaactaccatccgaagctccc 17075656  T
Q  120 gaagaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgg 219  Q
    ||||||||| |  | |||||||||||||| || ||||| ||||||||||||||| ||||||||||||| ||||| ||||| | ||  || |||||||| |    
T  17075655 gaagaaaccacttttaccgcctttttaaggcgttccgagccttgtaattttctcaatttagattttaagatgtgtaaaactgaggaacgatctttgctag 17075556  T
Q  220 gcaaccgcgccaccttcttcaaactaaataccgaatgccgcaaaattccattcactttcttcctctttataactattgaactggatttagcaaaaggccg 319  Q
    ||| |||||||||||| |||| |||||  ||||| || ||||||||||| ||||||||||||| |||  |||| || | ||||||||  ||||  |||||    
T  17075555 gcagccgcgccacctttttcagactaatcaccgagtgtcgcaaaattccgttcactttcttccgcttgttaacgatggtactggattgtgcaatgggccg 17075456  T
Q  320 caccactttcttaaccttctttcttgtcgaagaaataacaccagcg 365  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||    
T  17075455 caccactttcttaaccttcttccttgccgaagaaataacaccagcg 17075410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 147 - 365
Target Start/End: Complemental strand, 11053702 - 11053484
Alignment:
Q  147 agacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggcaaccgcgccaccttcttcaaactaa 246  Q
    ||||| || |||||||||||||| ||||||||||||||||| || || |||| || || ||| |||||||| ||||||||||||||||| ||||||||||    
T  11053702 agacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaatggtggaccgatctttgctaggcaaccgcgccacctttttcaaactaa 11053603  T
Q  247 ataccgaatgccgcaaaattccattcactttcttcctctttataactattga-actggatttagcaaaaggccgcaccactttcttaaccttctttcttg 345  Q
      ||||| ||||||| ||  ||||||||||||||||  ||  |  | |  || || |||||  |||| ||||||||||||||||||||||||||||||||    
T  11053602 tcaccgagtgccgcagaaccccattcactttcttccgattgtttgc-acagataccggattgggcaataggccgcaccactttcttaaccttctttcttg 11053504  T
Q  346 tcgaagaaataacaccagcg 365  Q
     ||| |||||||||||||||    
T  11053503 ccgatgaaataacaccagcg 11053484  T

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Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 11064166 - 11064036
Alignment:
Q  21 acatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcg 120  Q
    |||||||||| ||| || ||||||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| || || ||||||  ||    
T  11064166 acatcatcaaccactactttctcattctcatgcactgccacccaattgacccaatcattattaaccgatcccgacgaggaactaccttccgaaacttccg 11064067  T
Q  121 aagaaaccgccctaaccgcctttttaagacg 151  Q
    | |||||| || ||||| |||||||||||||    
T  11064066 aggaaaccaccttaaccacctttttaagacg 11064036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 21 - 282
Target Start/End: Original strand, 17683905 - 17684166
Alignment:
Q  21 acatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcg 120  Q
    |||||||||| | | || ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || || ||||||| ||    
T  17683905 acatcatcaaccgctactttctcattcccatgcactgccacccaattaacccaatcattattaaccgacctcgacgaggaactaccttccgaaactcccg 17684004  T
Q  121 aagaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctggg 220  Q
    | |||||| || | ||| ||||||||||||| || |||||||||||||| ||||||||||||||||| || || ||||||| || ||| |||||||| ||    
T  17684005 aggaaaccacctttaccacctttttaagacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaacggtggaccgatctttgctagg 17684104  T
Q  221 caaccgcgccaccttcttcaaactaaataccgaatgccgcaaaattccattcactttcttcc 282  Q
    |||| |||||||||| ||||||||||  ||||| ||||||||||  ||||||||||||||||    
T  17684105 caactgcgccacctttttcaaactaatcaccgagtgccgcaaaaccccattcactttcttcc 17684166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 36159902 - 36160065
Alignment:
Q  36 accttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaa 135  Q
    ||||||||||||||||||||  ||||  ||||||||||||| |||||||| || |  || || |||||   ||||||| ||| ||||||  || || | |    
T  36159902 accttctcattcccatgcacaaccacaaaattaacccaatcgttgttaactgaacatgaagaagaacttttatctgaagctcccgaagaccccaccttca 36160001  T
Q  136 ccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaac 199  Q
    |||||||||| ||||||||||| || ||||||||||| | ||||||||||| ||||||||||||    
T  36160002 ccgcctttttcagacgatccgacccatgtaattttctagctttagattttagaatgtgcaaaac 36160065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 314 - 365
Target Start/End: Original strand, 17684198 - 17684249
Alignment:
Q  314 aggccgcaccactttcttaaccttctttcttgtcgaagaaataacaccagcg 365  Q
    |||||||||||||||| | ||||||||||||| ||| |||||||||||||||    
T  17684198 aggccgcaccactttcctgaccttctttcttgccgatgaaataacaccagcg 17684249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 23 - 286
Target Start/End: Complemental strand, 10560002 - 10559739
Alignment:
Q  23 atcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaa 122  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| || ||||| ||||||||| ||| ||||    
T  10560002 atcatcaactacaaccttctcattcccatgcactgccacccaattaacccaatcattgttatctgaacccgaggaagaactaccatctgaagctcccgaa 10559903  T
Q  123 gaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggca 222  Q
    |||||| || | ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| ||||||| ||   | |||||||| ||||    
T  10559902 gaaaccacctttaccgcctttttgagacgatctgatccttgtaattttctcgatttagattttaagatgtgtaaaacggtggattgatctttgctaggca 10559803  T
Q  223 accgcgccaccttcttcaaactaaataccgaatgccgcaaaattccattcactttcttcctctt 286  Q
     | || ||||||| ||||||||||  ||||| ||||||| ||  ||||||||||||||||||||    
T  10559802 gctgccccacctttttcaaactaatcaccgagtgccgcagaaacccattcactttcttcctctt 10559739  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 10558490 - 10558434
Alignment:
Q  309 gcaaaaggccgcaccactttcttaaccttctttcttgtcgaagaaataacaccagcg 365  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10558490 gcaataggccgcaccactttcttaaccttctttcttgccgaagaaataacaccagcg 10558434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 21 - 364
Target Start/End: Original strand, 26741535 - 26741878
Alignment:
Q  21 acatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcg 120  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || ||||| || ||||| ||||| ||| ||| ||    
T  26741535 acatcatcaaccacaaccttctcattcccatgcacttccacccaattaacccaatcgttgttaactgaacccgaggaagaactaccatccgaagctcccg 26741634  T
Q  121 aagaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctggg 220  Q
    |||||||| |||| || ||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||| | ||  || ||||||| |||    
T  26741635 aagaaaccacccttacagccttcttaagacgatccgatccttgtaattttctcgacttagattttaagatgtgtaaaactgtggaacgatctttgcaggg 26741734  T
Q  221 caaccgcgccaccttcttcaaactaaataccgaatgccgcaaaattccattcactttcttcctctttataactattgaactggatttagcaaaaggccgc 320  Q
    || |||  ||||||| ||||||||||  ||||  | ||| || ||  ||||||||||||||| |||  |||| |  | ||  |||| ||||| |||| ||    
T  26741735 cagccgatccacctttttcaaactaatcaccgggttccgtaagatctcattcactttcttccgcttgttaacaaaggtacatgattgagcaataggctgc 26741834  T
Q  321 accactttcttaaccttctttcttgtcgaagaaataacaccagc 364  Q
     ||||| ||||||||||||| || | ||| ||||||||||||||    
T  26741835 gccactctcttaaccttcttcctagccgatgaaataacaccagc 26741878  T

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