View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13498_high_18 (Length: 358)

Name: NF13498_high_18
Description: NF13498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13498_high_18
NF13498_high_18
[»] chr3 (10 HSPs)
chr3 (7-358)||(46404517-46404868)
chr3 (62-337)||(5004687-5004970)
chr3 (61-338)||(16975252-16975515)
chr3 (57-165)||(16475273-16475381)
chr3 (61-231)||(11967971-11968130)
chr3 (62-149)||(9104174-9104261)
chr3 (73-166)||(17542813-17542904)
chr3 (61-138)||(7337257-7337334)
chr3 (177-229)||(8730913-8730966)
chr3 (177-229)||(9082800-9082853)
[»] chr7 (12 HSPs)
chr7 (63-358)||(15873891-15874186)
chr7 (71-338)||(21491459-21491739)
chr7 (60-262)||(22077631-22077831)
chr7 (61-223)||(18367412-18367577)
chr7 (51-270)||(48576321-48576538)
chr7 (62-198)||(9993291-9993427)
chr7 (52-203)||(48654339-48654488)
chr7 (62-149)||(12196729-12196816)
chr7 (61-104)||(10289388-10289431)
chr7 (271-338)||(18367293-18367363)
chr7 (65-103)||(11036685-11036723)
chr7 (62-99)||(7503909-7503946)
[»] chr6 (10 HSPs)
chr6 (63-358)||(34636188-34636477)
chr6 (57-338)||(25005139-25005429)
chr6 (61-338)||(23260544-23260829)
chr6 (62-338)||(32450228-32450512)
chr6 (236-337)||(10751527-10751636)
chr6 (63-162)||(26182602-26182700)
chr6 (62-137)||(11166587-11166662)
chr6 (61-114)||(10751623-10751676)
chr6 (63-227)||(24992418-24992578)
chr6 (61-166)||(13777247-13777350)
[»] scaffold0413 (1 HSPs)
scaffold0413 (61-358)||(8839-9145)
[»] chr5 (4 HSPs)
chr5 (143-358)||(536895-537110)
chr5 (63-223)||(536731-536891)
chr5 (43-338)||(4557935-4558241)
chr5 (62-149)||(27026621-27026708)
[»] chr1 (10 HSPs)
chr1 (61-338)||(35762015-35762303)
chr1 (51-262)||(9537406-9537615)
chr1 (60-197)||(37667265-37667401)
chr1 (62-229)||(16074710-16074879)
chr1 (219-338)||(37667144-37667271)
chr1 (61-184)||(21264718-21264841)
chr1 (63-166)||(6835953-6836056)
chr1 (61-138)||(338059-338135)
chr1 (61-138)||(43407930-43408007)
chr1 (62-103)||(8421574-8421615)
[»] chr2 (7 HSPs)
chr2 (61-213)||(32735391-32735543)
chr2 (53-229)||(1193590-1193765)
chr2 (62-166)||(12774954-12775056)
chr2 (51-166)||(28267692-28267804)
chr2 (129-221)||(29270702-29270792)
chr2 (43-137)||(23828298-23828392)
chr2 (61-138)||(40447432-40447508)
[»] chr4 (3 HSPs)
chr4 (62-262)||(28969233-28969431)
chr4 (95-338)||(49499045-49499297)
chr4 (61-149)||(40458905-40458992)
[»] scaffold1838 (1 HSPs)
scaffold1838 (107-262)||(221-374)
[»] scaffold0120 (1 HSPs)
scaffold0120 (62-137)||(2645-2720)
[»] chr8 (5 HSPs)
chr8 (61-166)||(22816487-22816590)
chr8 (129-229)||(35839168-35839268)
chr8 (60-137)||(20264999-20265076)
chr8 (60-137)||(21051628-21051705)
chr8 (64-149)||(40841568-40841652)
[»] scaffold0002 (1 HSPs)
scaffold0002 (50-137)||(356884-356971)


Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 7 - 358
Target Start/End: Complemental strand, 46404868 - 46404517
Alignment:
Q  7 ggagcacagactgatgcatgtgcattgagggtttcactaggaggtaaagcgtttgaggtaagggcttttt-ccccatacgttcttactaagtactaggat 105  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46404868 ggagtacagactgatgcatgtgcattgagggtttcactaggaggtaaagcgtttgaggtaagggcttttttccccatacgttcttactaagtactaggat 46404769  T
Q  106 tatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttat 205  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404768 tatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttat 46404669  T
Q  206 tagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattttttctattcatatatgtttttgtggtattgtaaagaagtgtta 305  Q
    |||||||||||||||||||||||| |||| ||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  46404668 tagtttaattatattttatatgatatctgtatgataatgttttgtggaatggca-tttttctattcatatatgtttttgtggtattgtaaagaagtgtta 46404570  T
Q  306 gactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtgga 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404569 gactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtgga 46404517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 62 - 337
Target Start/End: Complemental strand, 5004970 - 5004687
Alignment:
Q  62 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  5004970 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtcttttgaaaagaacaaaacaactaa 5004871  T
Q  162 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacat- 260  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  5004870 aatatgaatttatatggtgaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatgacatt 5004771  T
Q  261 -------tttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaata 337  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5004770 tattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaata 5004687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 61 - 338
Target Start/End: Original strand, 16975252 - 16975515
Alignment:
Q  61 gaggtaagggctttttcccc-atacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaact 159  Q
    ||||||||||||||| |||| |||| |||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  16975252 gaggtaagggcttttccccccatacattcttaataagtactaggattatgttatgaattagaggtagagattcttgtttgttgaaaagaacaaaacaact 16975351  T
Q  160 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgaca 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||     
T  16975352 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataattttatgtggaatgacg 16975451  T
Q  260 ttttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 338  Q
    |                |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16975452 t----------------tgtttttgtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaatat 16975515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 57 - 165
Target Start/End: Original strand, 16475273 - 16475381
Alignment:
Q  57 gtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaaca 156  Q
    |||| ||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16475273 gtttaaggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaaca 16475372  T
Q  157 actaaaata 165  Q
    |||||||||    
T  16475373 actaaaata 16475381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 61 - 231
Target Start/End: Complemental strand, 11968130 - 11967971
Alignment:
Q  61 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa--caaaacaac 158  Q
    |||||||||| |||||||| |||||| | |||||||||||||||| |||||||||      |||||||||||||      |||||||||  ||||| | |    
T  11968130 gaggtaagggttttttccc-atacgtccatactaagtactaggatgatgttatga------ggtagagattctt------tgaaaagaagacaaaaaatc 11968044  T
Q  159 taaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 231  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11968043 taaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatacgatgt 11967971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 9104174 - 9104261
Alignment:
Q  62 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 149  Q
    ||||||||| |||||||||||||||| |||||||||  ||||| | |||||| || ||  |||||  |||||||||| ||||||||||    
T  9104174 aggtaagggttttttccccatacgtttttactaagtgttaggactgtgttattaaatagtggtagcaattcttgtcttttgaaaagaa 9104261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 17542904 - 17542813
Alignment:
Q  73 ttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatat 166  Q
    |||||||||||||||||||||||||  ||||| | |||||| || ||  |||||  |||||||||| |||||||||  ||||||| ||||||||    
T  17542904 ttttccccatacgttcttactaagttttaggactgtgttattaaatagtggtagcaattcttgtctcttgaaaaga--aaaacaattaaaatat 17542813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 7337334 - 7337257
Alignment:
Q  61 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtct 138  Q
    |||||||||||||||||||||||||| | |||||||| |||||| | ||| || || ||| |||||| || |||||||    
T  7337334 gaggtaagggctttttccccatacgtccatactaagtgctaggactgtgtcattaagtaatggtagaaatgcttgtct 7337257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 8730913 - 8730966
Alignment:
Q  177 ggtaaaatttaaccttttataaaagttattagtt-taattatattttatatgat 229  Q
    |||||||||||| |||||||||||||||||| || | ||||| |||||||||||    
T  8730913 ggtaaaatttaatcttttataaaagttattaattctcattatgttttatatgat 8730966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 9082800 - 9082853
Alignment:
Q  177 ggtaaaatttaaccttttataaaagttattagtt-taattatattttatatgat 229  Q
    |||||||||||| |||||||||||||||||| || | ||||| |||||||||||    
T  9082800 ggtaaaatttaatcttttataaaagttattaattctcattatgttttatatgat 9082853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 63 - 358
Target Start/End: Complemental strand, 15874186 - 15873891
Alignment:
Q  63 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  15874186 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtatgttgaaaagaacaaaacaactaaa 15874087  T
Q  163 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattt 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| |||||    
T  15874086 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatatctgtatgataatgttttgtggaatggcattt 15873987  T
Q  263 tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtgga 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15873986 tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtgga 15873891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 71 - 338
Target Start/End: Complemental strand, 21491739 - 21491459
Alignment:
Q  71 ctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa--caaaacaactaaaatatga 168  Q
    |||||| ||||||||| | |||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||  ||||| |||||||||||||    
T  21491739 cttttttcccatacgtccatactaagtactaggatgatgttatgaattagaggtagagattcttgtcggttgaaaagaagacaaaaaaactaaaatatga 21491640  T
Q  169 attcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattttttcta 268  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||| ||||||||||| || ||    
T  21491639 atttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtgtgcat-aaaatgttatgtagaatgacatttatttta 21491541  T
Q  269 tt--------catatatg---tttttgtggtatt-gtaaagaagtgttagactttgctgataaactaaataaatgaaaatat 338  Q
    ||        ||||||||   ||||||||||||| | ||||||||||| || |||| |||||||||||| ||||||||||||    
T  21491540 ttttgatatgcatatatgttttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 21491459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 60 - 262
Target Start/End: Original strand, 22077631 - 22077831
Alignment:
Q  60 tgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaact 159  Q
    ||||||||||||||||| |||||| |||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||| | |||||  ||||||||    
T  22077631 tgaggtaagggcttttttcccatatgttcatactaagtactaggatgatgttatgaattagaggtagagattcttgtctgttaagaagaa--aaacaact 22077728  T
Q  160 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgaca 259  Q
    ||||||| |||| |||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||    
T  22077729 aaaatataaatttatatggtaaaatttaaccatttcaaaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgtagaatgaca 22077828  T
Q  260 ttt 262  Q
    |||    
T  22077829 ttt 22077831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 61 - 223
Target Start/End: Complemental strand, 18367577 - 18367412
Alignment:
Q  61 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaac-aaaac--aa 157  Q
    ||||||||||||||||||| |||||| | || |||| |||||||  |||||||||||||||||||||||||||||| ||||||||||||  |||||  ||    
T  18367577 gaggtaagggctttttccctatacgtccataataagaactaggacgatgttatgaattaaaggtagagattcttgtttgttgaaaagaaagaaaaccaaa 18367478  T
Q  158 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 223  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18367477 ttaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 18367412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 51 - 270
Target Start/End: Original strand, 48576321 - 48576538
Alignment:
Q  51 taaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaac 150  Q
    |||||||| | ||||||||||||||||||||||||| | ||||||||||| |||| ||||||||||||| |||||||||||||| || ||| |||||       
T  48576321 taaagcgtataaggtaagggctttttccccatacgtccatactaagtactgggataatgttatgaattagaggtagagattcttatccgttaaaaag--- 48576417  T
Q  151 aaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattag-tttaattatattttatatgatgtctgcatgataatgttatg 249  Q
    |||| || ||||||||||||| ||||||||||||||||  | |||| ||||||||||| ||||||||||| ||||||||||| || |||||||||| |||    
T  48576418 aaaataattaaaatatgaatttatatggtaaaatttaatatcttattaaagttattagttttaattatatattatatgatgtgtgtatgataatgtgatg 48576517  T
Q  250 tggaatgacattttttctatt 270  Q
      ||||||||||| |||||||    
T  48576518 cagaatgacatttattctatt 48576538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 198
Target Start/End: Original strand, 9993291 - 9993427
Alignment:
Q  62 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 161  Q
    |||||||||||||||||||| ||||||||||||||| |||||  | |||||| || ||  ||||   |||||||||| |||||||||| ||||||| |||    
T  9993291 aggtaagggctttttccccacacgttcttactaagtgctagggctttgttattaaataggggtaacaattcttgtcttttgaaaagaagaaaacaattaa 9993390  T
Q  162 aatatgaattcatatggtaaaatttaaccttttataa 198  Q
    |||||  ||| |||||||||||| |||  ||||||||    
T  9993391 aatatttatttatatggtaaaatctaatattttataa 9993427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 203
Target Start/End: Complemental strand, 48654488 - 48654339
Alignment:
Q  52 aaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaaca 151  Q
    ||||| || |||||||||| ||||||||||||||| | |||||||||||||||| ||||| ||||||| | ||| | |||||||||| ||| |||||  |    
T  48654488 aaagctttcgaggtaagggttttttccccatacgtccatactaagtactaggatgatgttgtgaattagaagtacaaattcttgtcttttggaaaga--a 48654391  T
Q  152 aaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagtt 203  Q
    |||||||||||||||  ||| |  |||||| |||||||  |||| |||||||    
T  48654390 aaacaactaaaatatatatttaggtggtaatatttaacagtttacaaaagtt 48654339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 149
Target Start/End: Complemental strand, 12196816 - 12196729
Alignment:
Q  62 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 149  Q
    ||||||||||||||||||||||| |||||||||||| | |||| |||||||| || ||  |||||  |||||||||| || |||||||    
T  12196816 aggtaagggctttttccccatacattcttactaagtgcaaggactatgttattaaatagtggtagcaattcttgtcttttaaaaagaa 12196729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 10289431 - 10289388
Alignment:
Q  61 gaggtaagggctttttccccatacgttcttactaagtactagga 104  Q
    |||||||||||||||||||||||||| | |||||||| ||||||    
T  10289431 gaggtaagggctttttccccatacgtccatactaagtgctagga 10289388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 338
Target Start/End: Complemental strand, 18367363 - 18367293
Alignment:
Q  271 catatatgttttt--gtggtattgt-aaagaagtgttagactttgctgataaactaaataaatgaaaatat 338  Q
    |||||||||||||  |||||||||  ||||||||||| || |||| |||||||||||| ||||||||||||    
T  18367363 catatatgtttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 18367293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 11036723 - 11036685
Alignment:
Q  65 taagggctttttccccatacgttcttactaagtactagg 103  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  11036723 taagggctttttccccacacgttcttactaagtgctagg 11036685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 7503909 - 7503946
Alignment:
Q  62 aggtaagggctttttccccatacgttcttactaagtac 99  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  7503909 aggtaagggctttttccccatacgtccatactaagtac 7503946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 63 - 358
Target Start/End: Original strand, 34636188 - 34636477
Alignment:
Q  63 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34636188 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 34636287  T
Q  163 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattt 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  34636288 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggcatgacattt 34636387  T
Q  263 tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtgga 358  Q
    |||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636388 tttctattcatatatgtttttgtggtatt------aagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtgga 34636477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 57 - 338
Target Start/End: Original strand, 25005139 - 25005429
Alignment:
Q  57 gtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaaca 156  Q
    |||| ||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25005139 gtttaaggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaaca 25005238  T
Q  157 actaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatg 256  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  25005239 actaaaataagaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataattttatgtggaatg 25005338  T
Q  257 acat--------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 338  Q
    ||||        |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25005339 acatttattttatttttctattcatatatgtttttgtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaatat 25005429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 61 - 338
Target Start/End: Complemental strand, 23260829 - 23260544
Alignment:
Q  61 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 160  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  23260829 gaggtaagggctttttccccatacgttcttactaagtattaggattatgttatgaattagaggtagagattcttgtctcttgaaaagaacaaaacaacta 23260730  T
Q  161 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacat 260  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  23260729 aaatatgaattcatatggtaaaatttagccttttataaaagttattagtttaattatattttatatgatgtttgtatgataatgttatgtggaatgacat 23260630  T
Q  261 --------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 338  Q
            |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  23260629 ttattttatttttctattcatatatgtttttgtggtattgttaaagaagtgttaga-tttgctgataaactaaataaatgaaaatat 23260544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 62 - 338
Target Start/End: Complemental strand, 32450512 - 32450228
Alignment:
Q  62 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 161  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32450512 aggtaagggctttt-ccccgtacgttcttactaagtactaggattgtgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 32450414  T
Q  162 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacat- 260  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||     
T  32450413 aatatgaattcatatggtaaattttaactttttataaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgtggaatgacatt 32450314  T
Q  261 -------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 338  Q
           ||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  32450313 tattttatttttctatgcatatatgtttttgtggtattgttaaagaagtgttagactttgttgataaactaaataaatgaaaatat 32450228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 236 - 337
Target Start/End: Complemental strand, 10751636 - 10751527
Alignment:
Q  236 atgataatgttatgtggaatgacattt--------tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaata 327  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10751636 atgataatgttatgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaata 10751537  T
Q  328 aatgaaaata 337  Q
    ||||||||||    
T  10751536 aatgaaaata 10751527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 63 - 162
Target Start/End: Complemental strand, 26182700 - 26182602
Alignment:
Q  63 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 162  Q
    ||||||||||||||||||||| || | ||||||||| |||||| ||||||||||||| || ||||||||||||| |||||| ||||| ||||||||||||    
T  26182700 ggtaagggctttttccccatatgtccatactaagtattaggatgatgttatgaattagagttagagattcttgtatgttgagaagaa-aaaacaactaaa 26182602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 11166662 - 11166587
Alignment:
Q  62 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 137  Q
    ||||||||||||||||||||||||||||||||||||  ||||||  | ||||||| ||  |||||||||| |||||    
T  11166662 aggtaagggctttttccccatacgttcttactaagtgttaggatcttattatgaaatagtggtagagatttttgtc 11166587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 10751676 - 10751623
Alignment:
Q  61 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatg 114  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||| ||||||||    
T  10751676 gaggtaagggccttttccccatacattcttactaagtactatgataatgttatg 10751623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 227
Target Start/End: Original strand, 24992418 - 24992578
Alignment:
Q  63 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 162  Q
    ||||||||||||||||| ||| ||   || |||||||||||  |||||||||||||| | ||||| |||||||| | |||||||||  ||||||| ||||    
T  24992418 ggtaagggctttttccc-atatgtctatattaagtactagggatatgttatgaattataagtagaaattcttgt-ttttgaaaaga--aaaacaattaaa 24992513  T
Q  163 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatg 227  Q
    ||||   || |  ||||||||||||  ||||||||||| | |||| ||||||||  |||||||||    
T  24992514 atatttctttacgtggtaaaatttattcttttataaaactgattattttaattaagttttatatg 24992578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 13777350 - 13777247
Alignment:
Q  61 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 160  Q
    ||||||||| |||||||||| ||||| | || ||| ||||||||| ||||| ||||||| | ||| | |||||| ||| ||| ||||||  |||||||||    
T  13777350 gaggtaaggactttttccccgtacgtccataataaatactaggatgatgttgtgaattagaagtacaaattcttatcttttggaaagaa--aaacaacta 13777253  T
Q  161 aaatat 166  Q
    ||||||    
T  13777252 aaatat 13777247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 61 - 358
Target Start/End: Original strand, 8839 - 9145
Alignment:
Q  61 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||    
T  8839 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtataaattcttgtctgttgaaaagaacaaaacaacta 8938  T
Q  161 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgac-- 258  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||      
T  8939 aaatatgaattcacatggtaaaatttaaccttttataacagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatgacat 9038  T
Q  259 -------attttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtcc 351  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9039 ttattttattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagattggtcc 9138  T
Q  352 atgtgga 358  Q
    |||||||    
T  9139 atgtgga 9145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 143 - 358
Target Start/End: Original strand, 536895 - 537110
Alignment:
Q  143 aaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataa 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  536895 aaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataa 536994  T
Q  243 tgttatgtggaatgacattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttca 342  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536995 tgttatgtggaatggcattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttca 537094  T
Q  343 gtttggtccatgtgga 358  Q
    ||||||||||||||||    
T  537095 gtttggtccatgtgga 537110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 63 - 223
Target Start/End: Original strand, 536731 - 536891
Alignment:
Q  63 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  536731 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 536830  T
Q  163 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536831 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 536891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 43 - 338
Target Start/End: Complemental strand, 4558241 - 4557935
Alignment:
Q  43 ctaggaggtaaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttg 142  Q
    |||||||||||| |||  ||||||||||||||||||| ||||||   ||||||||| |||||| ||||||||| ||| ||||||||||||||||||||||    
T  4558241 ctaggaggtaaaacgtacgaggtaagggctttttccc-atacgtctatactaagtattaggatgatgttatgatttagaggtagagattcttgtctgttg 4558143  T
Q  143 aaaaga-acaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgata 241  Q
    | |||| | |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || || |||    
T  4558142 agaagagagaaaaaaactaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaatcatattttatataatgtgtgtataata 4558043  T
Q  242 atgttatgtggaatgacattttttctatt--------catatatg--tttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaat 330  Q
    |||||| || ||||||| ||| || ||||        ||||||||  ||||||||||||||  ||||||||||| || |||| |||||||||||| ||||    
T  4558042 atgttacgtagaatgacttttattttattttgatatgcatatatgtttttttgtggtattgagaaagaagtgttggattttgttgataaactaaagaaat 4557943  T
Q  331 gaaaatat 338  Q
    ||||||||    
T  4557942 gaaaatat 4557935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 27026621 - 27026708
Alignment:
Q  62 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 149  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| |||||| || ||  ||||   |||||||||| ||||||||||    
T  27026621 aggtaagggctttttccccatacgtttttactaagtgctaggattgtgttattaaatagtggtaacaattcttgtcttttgaaaagaa 27026708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 61 - 338
Target Start/End: Complemental strand, 35762303 - 35762015
Alignment:
Q  61 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 160  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  35762303 gaggtaagggctttttccccatacgtccatactaagtactaggattatgttatgaattagaggtagagattcttgtatgttgaaaagaacaaaacaacta 35762204  T
Q  161 aaatatgaattcatatggtaaaatttaaccttttat--aaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgac 258  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||    
T  35762203 aaatatgaatttatatggtaaaatttaaccttttataaaaaagttattagtttaactatattttatatgatgtgtgtatgataatgttatgtggaatgac 35762104  T
Q  259 at--------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 338  Q
    ||        ||||||||| |||||||||||||||||||||| ||| ||||||||||||||||  ||||||||||||||||||||||||    
T  35762103 atttattttatttttctatgcatatatgtttttgtggtattgttaatgaagtgttagactttgtagataaactaaataaatgaaaatat 35762015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 51 - 262
Target Start/End: Complemental strand, 9537615 - 9537406
Alignment:
Q  51 taaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaac 150  Q
    |||||||| | | |||||||||||| || ||||||| | |||| ||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||     
T  9537615 taaagcgtatcaagtaagggcttttacctcatacgtccatactgagtactaggatgatgttatgaattagaggtatagattcttgtctgttgagaagaa- 9537517  T
Q  151 aaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgt 250  Q
     |||||| |||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  9537516 -aaacaagtaaaatataaatttatattgtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgataatgttatgt 9537418  T
Q  251 ggaatgacattt 262  Q
     |||||||||||    
T  9537417 agaatgacattt 9537406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 60 - 197
Target Start/End: Complemental strand, 37667401 - 37667265
Alignment:
Q  60 tgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaact 159  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37667401 tgaggtaagg-ctttttccccatacgttcttactaagtaataggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaact 37667303  T
Q  160 aaaatatgaattcatatggtaaaatttaaccttttata 197  Q
    |||||||||||||||||| |||||||||||||||||||    
T  37667302 aaaatatgaattcatatgataaaatttaaccttttata 37667265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 62 - 229
Target Start/End: Original strand, 16074710 - 16074879
Alignment:
Q  62 aggtaagggctttttccccatacgttcttactaagtactaggattatg---ttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaac 158  Q
    ||||||||||||||| ||||||||||| ||||||||||| |||| |||   |||||||||| || |||||||| ||||| ||| |||||||  ||||||     
T  16074710 aggtaagggcttttttcccatacgttcatactaagtactgggatgatgatattatgaattagagatagagatttttgtccgttaaaaagaa--aaacaat 16074807  T
Q  159 taaaatatgaattcatatggtaaaatttaaccttttataaaagttattag-tttaattatattttatatgat 229  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  16074808 taaaatatgaattcatatgttaaaatttaatcttttataaaagttattagatttaattatattttatatgat 16074879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 219 - 338
Target Start/End: Complemental strand, 37667271 - 37667144
Alignment:
Q  219 ttttatatgatgtctgcatgataatgttatgtggaatgacattt--------tttctattcatatatgtttttgtggtattgtaaagaagtgttagactt 310  Q
    |||||||||||||||| ||||||||||||||||||||||| |||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37667271 ttttatatgatgtctgtatgataatgttatgtggaatgacttttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactt 37667172  T
Q  311 tgctgataaactaaataaatgaaaatat 338  Q
    ||||||||||||||||||||||||||||    
T  37667171 tgctgataaactaaataaatgaaaatat 37667144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 184
Target Start/End: Complemental strand, 21264841 - 21264718
Alignment:
Q  61 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 160  Q
    ||||||||||||||||||||||||||||||||||||| |||||  | ||| || ||  |  |||||  |||||||||| |||||||||| ||||||| ||    
T  21264841 gaggtaagggctttttccccatacgttcttactaagtgctagggctttgtgattaaacaggggtagcaattcttgtcttttgaaaagaagaaaacaatta 21264742  T
Q  161 aaatatgaattcatatggtaaaat 184  Q
    ||||||  ||| | ||||||||||    
T  21264741 aaatatttatttacatggtaaaat 21264718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 166
Target Start/End: Original strand, 6835953 - 6836056
Alignment:
Q  63 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 162  Q
    ||||||||||||||||||||||||||||||||||| |||||  | | | || || ||  |||||  |||||||||| |||||||||| ||||||| ||||    
T  6835953 ggtaagggctttttccccatacgttcttactaagtgctagggctttatgattaaataggggtagcaattcttgtcttttgaaaagaagaaaacaattaaa 6836052  T
Q  163 atat 166  Q
    ||||    
T  6836053 atat 6836056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 338059 - 338135
Alignment:
Q  61 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtct 138  Q
    |||||||||||||||||||||||||| | |||||||| ||| || |||||||| || || ||||||  ||||||||||    
T  338059 gaggtaagggctttttccccatacgtccatactaagtgcta-gactatgttattaagtagaggtagtaattcttgtct 338135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 43408007 - 43407930
Alignment:
Q  61 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtct 138  Q
    |||||||||||||||||||||||||| | |||||||| |||||| | ||| || || ||| |||||| || |||||||    
T  43408007 gaggtaagggctttttccccatacgtccatactaagtgctaggactgtgtcattaagtaatggtagaaatgcttgtct 43407930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 8421574 - 8421615
Alignment:
Q  62 aggtaagggctttttccccatacgttcttactaagtactagg 103  Q
    ||||||||||||||||||||||||| | |||||||| |||||    
T  8421574 aggtaagggctttttccccatacgtacatactaagtgctagg 8421615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 61 - 213
Target Start/End: Complemental strand, 32735543 - 32735391
Alignment:
Q  61 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 160  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32735543 gaggtaagggctttttccccatacgttcttactaagtgctaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 32735444  T
Q  161 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaa 213  Q
    ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||    
T  32735443 aaatatgcattcatatggtgaaatttaaccttttataaaagatattagtttaa 32735391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 1193590 - 1193765
Alignment:
Q  53 aagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaa 152  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||||| |||| | | |||||| ||  |  |||||  |||||||||| |||||||||| ||    
T  1193590 aagcgttcgaggtaagggctttttccc-ataagttcttactaagtgctagtactttgttattaaacaggggtagcaattcttgtcttttgaaaagaagaa 1193688  T
Q  153 aacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgat 229  Q
    ||||| ||||||||  ||| | |||||||| | |||  |||||||| ||| |||| |||||||   |||||||||||    
T  1193689 aacaattaaaatatttatttacatggtaaagtctaatattttataagagtgattattttaattgagttttatatgat 1193765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 62 - 166
Target Start/End: Complemental strand, 12775056 - 12774954
Alignment:
Q  62 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 161  Q
    ||||||||||||||||||||||||| | ||| |||||||||||| ||||| ||||||| | ||| | |||||| ||| ||| |||||  |||||||||||    
T  12775056 aggtaagggctttttccccatacgtccatacaaagtactaggatgatgttgtgaattagaagtacaaattcttatcttttggaaaga--aaaacaactaa 12774959  T
Q  162 aatat 166  Q
    |||||    
T  12774958 aatat 12774954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 166
Target Start/End: Complemental strand, 28267804 - 28267692
Alignment:
Q  51 taaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaac 150  Q
    |||||||| | ||||||||| |||||||| |||||| | |||||||||||||||| ||||| ||||||| | ||| | |||||| ||| |||||||||      
T  28267804 taaagcgtataaggtaagggttttttccc-atacgtccatactaagtactaggatgatgttgtgaattagaagtacaaattcttatcttttgaaaaga-- 28267708  T
Q  151 aaaacaactaaaatat 166  Q
    ||||||||||||||||    
T  28267707 aaaacaactaaaatat 28267692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 29270702 - 29270792
Alignment:
Q  129 attcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattt 221  Q
    |||||||||| ||||||||||  |||||| ||||||||| | | | || |||||||||||  |||||||||| |||||| |||||||||||||    
T  29270702 attcttgtcttttgaaaagaa--aaacaattaaaatatgtagttacatagtaaaatttaatattttataaaaattattattttaattatattt 29270792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 23828392 - 23828298
Alignment:
Q  43 ctaggaggtaaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 137  Q
    |||||| ||||||||| | ||||||||  ||||| |||| |||||||||||||||  ||||| | ||||||||| ||  |||||| |||||||||    
T  23828392 ctaggaagtaaagcgtctaaggtaaggatttttttcccacacgttcttactaagtgttaggactttgttatgaaatagtggtagaaattcttgtc 23828298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 40447432 - 40447508
Alignment:
Q  61 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtct 138  Q
    |||||||||||||||||||||||||| | |||||||| ||| || |||||||| || || ||||||  ||||||||||    
T  40447432 gaggtaagggctttttccccatacgtccatactaagtgcta-gactatgttattaagtagaggtagtaattcttgtct 40447508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 62 - 262
Target Start/End: Complemental strand, 28969431 - 28969233
Alignment:
Q  62 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaa 161  Q
    ||||||||| ||||||| ||||||| | |||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| |||||  ||||||||||    
T  28969431 aggtaagggttttttcctcatacgtccatactaagtactaggatgatgttatgaattagaggtagaaattcttgtctgttgagaagaa--aaacaactaa 28969334  T
Q  162 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacatt 261  Q
    ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| || |||||||| |||||| ||||||||||    
T  28969333 aatattaatttatatggtaaaatttaacattttataaaagttattagtttaattatattctatatgatgtgtgtatgataattttatgtagaatgacatt 28969234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 95 - 338
Target Start/End: Original strand, 49499045 - 49499297
Alignment:
Q  95 agtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaacctttt 194  Q
    ||||||||||| ||||||||||||| |||| |||||||||||||||||| ||||| |||| |||||||||||||||| |||| |||||||||||||||||    
T  49499045 agtactaggatcatgttatgaattagaggtggagattcttgtctgttgagaagaaaaaaaaaactaaaatatgaatttatatagtaaaatttaacctttt 49499144  T
Q  195 ataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattttttctatt--------catatatg-tttttgt 285  Q
    |||||| ||||||||||||||||||||||||| |||| || || |  |||||| || ||||||||||| || ||||        |||||||| |||||||    
T  49499145 ataaaaattattagtttaattatattttatataatgtgtgtat-aagatgttacgtagaatgacatttattttattttgatatgcatatatgttttttgt 49499243  T
Q  286 ggtatt-gtaaagaagtgttagactttgctgataaactaaataaatgaaaatat 338  Q
    |||||| | ||||||||||| || |||| |||||||||||| ||||||||||||    
T  49499244 ggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 49499297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 40458905 - 40458992
Alignment:
Q  61 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 149  Q
    |||||||||||||||||||||||||| | |||||||| ||| || | |||||| || || ||||||  |||||||||| || |||||||    
T  40458905 gaggtaagggctttttccccatacgtccatactaagtgcta-gactgtgttattaagtagaggtagcaattcttgtcttttaaaaagaa 40458992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 107 - 262
Target Start/End: Original strand, 221 - 374
Alignment:
Q  107 atgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttatt 206  Q
    ||||||||||||| || ||||||||||||| |||| |||||||  ||| || |||||||| |||  ||||||||||||||||||||||||||||||||||    
T  221 atgttatgaattagagatagagattcttgtttgttaaaaagaa--aaataattaaaatataaatctatatggtaaaatttaaccttttataaaagttatt 318  T
Q  207 agtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattt 262  Q
    ||||||||||||||||||||||||| || ||||||||||||||| ||||| |||||    
T  319 agtttaattatattttatatgatgtgtgtatgataatgttatgtagaatgccattt 374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 2720 - 2645
Alignment:
Q  62 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 137  Q
    |||||||||||||||||||||||||||||||||||| |||||| | |||||| || ||  |||||| |||||||||    
T  2720 aggtaagggctttttccccatacgttcttactaagtgctaggactttgttataaaatagtggtagaaattcttgtc 2645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 22816590 - 22816487
Alignment:
Q  61 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaacaaaacaacta 160  Q
    |||||||||||||||||||||||||||||| ||||||  ||||| | |||||| || ||  ||| |  |||||||||| |||||||||  ||||||| ||    
T  22816590 gaggtaagggctttttccccatacgttcttgctaagtgttaggactgtgttattaaatagtggttgcaattcttgtctcttgaaaaga--aaaacaatta 22816493  T
Q  161 aaatat 166  Q
    ||||||    
T  22816492 aaatat 22816487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 35839168 - 35839268
Alignment:
Q  129 attcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatga 228  Q
    |||||||||| |||||||||| ||||||| ||||||||  ||| | |||||||||| |||  |||||||| ||| |||| |||||||   ||||||||||    
T  35839168 attcttgtcttttgaaaagaagaaaacaattaaaatatttatttacatggtaaaatctaatattttataagagtgattattttaattgagttttatatga 35839267  T
Q  229 t 229  Q
    |    
T  35839268 t 35839268  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 20265076 - 20264999
Alignment:
Q  60 tgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 137  Q
    ||||||||||| |||||||| ||||||||||| ||||| |||||||  |||| |||| ||  |||||| |||||||||    
T  20265076 tgaggtaagggatttttcccgatacgttcttagtaagtgctaggatcgtgttttgaagtagtggtagaaattcttgtc 20264999  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 21051705 - 21051628
Alignment:
Q  60 tgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 137  Q
    ||||||||||| |||||||| ||||||||||| ||||| |||||||  |||| |||| ||  |||||| |||||||||    
T  21051705 tgaggtaagggatttttcccgatacgttcttagtaagtgctaggatcgtgttttgaagtagtggtagaaattcttgtc 21051628  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 40841652 - 40841568
Alignment:
Q  64 gtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtctgttgaaaagaa 149  Q
    |||||||||||||||| |||||||||||||||||  ||||| | |||||| || ||  |||||  |||||||||| ||||||||||    
T  40841652 gtaagggctttttccc-atacgttcttactaagtgttaggactgtgttattaaatagtggtagcaattcttgtcttttgaaaagaa 40841568  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 356971 - 356884
Alignment:
Q  50 gtaaagcgtttgaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattaaaggtagagattcttgtc 137  Q
    ||||||||| | ||||||||  |||||||||||||||||||||||||| ||||||   |||| |||| ||  |||||| |||||||||    
T  356971 gtaaagcgtctaaggtaaggattttttccccatacgttcttactaagtgctaggaccgtgttttgaagtagtggtagaaattcttgtc 356884  T

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