View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13498_high_19 (Length: 353)
Name: NF13498_high_19
Description: NF13498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13498_high_19 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 190 - 353
Target Start/End: Complemental strand, 8196610 - 8196447
Alignment:
| Q |
190 |
cctcacaagaataacatgaattcaaatttgtctgctaaagtaaagaattatcatgctggcattgacaaactgatatattaattaccatccaatgtagcat |
289 |
Q |
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| T |
8196610 |
cctcacaagaataacatgaattcaaatttgtcagctaaagtaaagaattatcatgctggcattgacaaactgatatattaattaccatccaatgtagcat |
8196511 |
T |
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| Q |
290 |
gcgtacaggacaaacaaataacagagtcaaacttggaaagacatggacagggcagtctcaatat |
353 |
Q |
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| T |
8196510 |
gcgtacaggacaaacaaataacagagtcaaacttggaaagacatggacagggcagtctcaatat |
8196447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 190 - 353
Target Start/End: Complemental strand, 8201370 - 8201207
Alignment:
| Q |
190 |
cctcacaagaataacatgaattcaaatttgtctgctaaagtaaagaattatcatgctggcattgacaaactgatatattaattaccatccaatgtagcat |
289 |
Q |
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| T |
8201370 |
cctcacaagaataacatgaattcaaatttgtcagctaaagtaaagaattatcatgctggcattgacaaactgatatattaattaccatccaatgtagcat |
8201271 |
T |
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| Q |
290 |
gcgtacaggacaaacaaataacagagtcaaacttggaaagacatggacagggcagtctcaatat |
353 |
Q |
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| T |
8201270 |
gcgtacaggacaaacaaataacagagtcaaacttggaaagacatggacagggcagtctcaatat |
8201207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 24 - 189
Target Start/End: Complemental strand, 8196847 - 8196682
Alignment:
| Q |
24 |
catcacccagcataaaggttattcaacagaataaggttggccgcagatggtcatgaaccagaagcaacagaaacaaatagttaatagattgatgaaaaac |
123 |
Q |
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| T |
8196847 |
catcacccagcataaaggttattcaacagaataaggttggcagcagatggtcatgaatcagaagcaacagaaacaaatagttaatagattgatgaaaaac |
8196748 |
T |
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| Q |
124 |
atatgaattaaagcatggagcaaaagttgaaattagaaaatttccaactttgcataaaggaagctg |
189 |
Q |
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| T |
8196747 |
atatgaattaaagcatggagcaaaagttgaaattagaaaatttccaactttgcataaaggaagctg |
8196682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 24 - 189
Target Start/End: Complemental strand, 8201607 - 8201442
Alignment:
| Q |
24 |
catcacccagcataaaggttattcaacagaataaggttggccgcagatggtcatgaaccagaagcaacagaaacaaatagttaatagattgatgaaaaac |
123 |
Q |
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| T |
8201607 |
catcacccagcataaaggttattcaacagaataaggttggcagcagatggtcatgaatcagaagcaacagaaacaaatagttaatagattgatgaaaaac |
8201508 |
T |
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| Q |
124 |
atatgaattaaagcatggagcaaaagttgaaattagaaaatttccaactttgcataaaggaagctg |
189 |
Q |
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| T |
8201507 |
atatgaattaaagcatggagcaaaagttgaaattagaaaatttccaactttgcataaaggaagctg |
8201442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 4918040 - 4918121
Alignment:
| Q |
104 |
ttaatagattgatgaaaaacatatgaattaaagcatggagcaaaagttgaaattagaaaatttccaactttgcataaaggaa |
185 |
Q |
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| T |
4918040 |
ttaataggtcgatgaaaaacatatgaattaaagcatggagcaaaagttgatattagaaagtttgcaactttgcattaaggaa |
4918121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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