View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13498_high_2 (Length: 722)
Name: NF13498_high_2
Description: NF13498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13498_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 253 - 694
Target Start/End: Complemental strand, 17219516 - 17219054
Alignment:
| Q |
253 |
acttcaacactaagggatctgtttcaatgtacacagaaacctctaagaacaaatgttaaaccaatagtcaatcgactattggttgtagcttagtttacgc |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17219516 |
acttcaacactaagggatctgtttcaatgtacacagacacctctaagaataaatgttaaaccaatagtcaatcgactattggttgtagcttagtttacgc |
17219417 |
T |
|
| Q |
353 |
tttaaatttaaattttaacgaaaatattgctcaattgaaaaccttcctggatgcaaagggatatgcacacatttaagatgtgactatagtgaaaaccttc |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17219416 |
tttaaatttaaattttaacgaaaatattgctcaattgaaaaccttcctggatgcaaagggatatgcacacatttaagatgtgactatagtgaaaaccttc |
17219317 |
T |
|
| Q |
453 |
cttgttttacatagttacttacagaagtaatcaactatggagaaattaca---------------------atcaagaatattttccaatcaaataagtc |
531 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17219316 |
cttgttttacatagtgaattacagaagtaatcaactatggagaaattacataagtttgttctcagaatacgatcaagaatattttccaatcaaataagtc |
17219217 |
T |
|
| Q |
532 |
atttatggctaaaagcagttgggtaagaatttgttcagttggtaaatgtttatttacagaatcttaaagttatgatggaaaaggagcaatagtggttaaa |
631 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17219216 |
atttatggctaaaagcagttggctaagaatttgttcagttagtaaatatttatatacagaatcttaaagttatgatggaaaaggagcaatagtggttaaa |
17219117 |
T |
|
| Q |
632 |
tttatgtcttaaaacattgtgaatgtgagctgcactttatattcattgtttatgcaaacaaat |
694 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17219116 |
tttatgttttaaaacattgtgaatgtgagctgcactttatattcattgtttatgcaaacaaat |
17219054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 690
Target Start/End: Complemental strand, 17205962 - 17205863
Alignment:
| Q |
591 |
aatcttaaagttatgatggaaaaggagcaatagtggttaaatttatgtcttaaaacattgtgaatgtgagctgcactttatattcattgtttatgcaaac |
690 |
Q |
| |
|
||||||| |||| | ||||||||||||||| |||||||| ||| ||| | |||||||| |||||| |||| |||||| |||| ||||||||||||||| |
|
|
| T |
17205962 |
aatcttagagttcttatggaaaaggagcaagagtggttatattactgtttaaaaacattctgaatgaaagctacactttttattgattgtttatgcaaac |
17205863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 17206983 - 17206925
Alignment:
| Q |
28 |
acatcttcacgtagcatacttacgtttaaactttcaacagttgagccaacaaactccat |
86 |
Q |
| |
|
|||||||||| || |||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
17206983 |
acatcttcacttatcatacttacgtttaggctttcaacagttgagccaacgaactccat |
17206925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 440
Target Start/End: Complemental strand, 17206318 - 17206191
Alignment:
| Q |
312 |
accaatagtcaatcgactattggttgtagcttagtttacgctttaaatttaaattttaacgaaaatattgctcaattgaaaaccttcctggatgcaaagg |
411 |
Q |
| |
|
|||||||||| | ||||| ||||||||||| ||||| | ||||||| |||||| ||| ||| | |||| | ||||||||||||||| | |||||| | |
|
|
| T |
17206318 |
accaatagtccaatgactactggttgtagctaagtttccactttaaaattaaatcataatgaaccttttgcaccattgaaaaccttcctagttgcaaa-g |
17206220 |
T |
|
| Q |
412 |
gatatgcacacatttaagatgtgactata |
440 |
Q |
| |
|
| |||||| | ||||||||||| |||||| |
|
|
| T |
17206219 |
gttatgcataaatttaagatgtaactata |
17206191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 17206752 - 17206686
Alignment:
| Q |
81 |
ctccatccattaaaaatcttatagttggaggcacctgcatt-atattgaatatagcataaataaaaa |
146 |
Q |
| |
|
|||||||||||| |||||| | ||||||||||||||||||| |||| | ||||| ||||||||||| |
|
|
| T |
17206752 |
ctccatccattacaaatctcaaagttggaggcacctgcattaatatgggatataagataaataaaaa |
17206686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University