View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13498_high_22 (Length: 344)
Name: NF13498_high_22
Description: NF13498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13498_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 197 - 323
Target Start/End: Original strand, 16594559 - 16594683
Alignment:
| Q |
197 |
gttcagacacataacataatgtattgaaacccaaacaactggatctaaaaaactcatatctaaaacccaaagccacatgttccaaatcaaaacaaaagaa |
296 |
Q |
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| T |
16594559 |
gttcagacacataacataatgtattgaaacccaaaca-ctggat-taaaaaactcatatctaaaactcatagccacatgttccaaatcaaaacaaaagaa |
16594656 |
T |
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| Q |
297 |
ttaaacataaaaatggataggattgag |
323 |
Q |
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| T |
16594657 |
ttaaacataaaaatggataggattgag |
16594683 |
T |
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Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 16594386 - 16594483
Alignment:
| Q |
24 |
acatcatcaatacaaaagtatactaagggcaactacaattataacttaaaaaattcaatttatttaactaacttaattaatatttataaatgtatgaa |
121 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16594386 |
acatcatcaaaacaaaagcatactaagggcaactacaattataacttaaaaaattcaatttatttaactaacttaattaatatttataaatgtatgaa |
16594483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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