View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13498_high_23 (Length: 341)
Name: NF13498_high_23
Description: NF13498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13498_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 29235671 - 29235339
Alignment:
| Q |
1 |
gataggagtcacattgggtatccatctgacaaaaagattcctcaaaattatatttacatgatttgctgcaatgtagcttttgctttgcacttgcagatca |
100 |
Q |
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| T |
29235671 |
gatagtagtcacattgggtttccatctgacaaaaagattcctcaaaattatatttacatgatttgctgcaatgtagcttttgctttgcacttgcagacca |
29235572 |
T |
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| Q |
101 |
tagacaagtgtttgaaaccatgaaaacatggtttcaatattctcatcatccttcattttgaatagcccatgttgttggatcagaagatttgtcttggctt |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29235571 |
tagacaagtgtttgaaacca----aacatggtttcaatattgtcatcatccttcattttgaatagcccatgttgttggatcagaagatttgtcttggctt |
29235476 |
T |
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| Q |
201 |
cctttacttgttgatttccctcatatgtagagcaaattaaatttgtaaattgtttcaatatcctcaaggaagagaagagtattcaccatgatactttgag |
300 |
Q |
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|||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29235475 |
cctttacttgttgatttccctcatatgtagagcatagtagatttgtaaattgtttcaatatcctcaaggaagagaagagtattcaccatgatactttgag |
29235376 |
T |
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| Q |
301 |
ttttatgatgtttcttgtaaggctttctctgctcctc |
337 |
Q |
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|||||||||||||||||||||||||| | |||||||| |
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| T |
29235375 |
ttttatgatgtttcttgtaaggctttttatgctcctc |
29235339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 29348970 - 29348638
Alignment:
| Q |
1 |
gataggagtcacattgggtatccatctgacaaaaagattcctcaaaattatatttacatgatttgctgcaatgtagcttttgctttgcacttgcagatca |
100 |
Q |
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| T |
29348970 |
gatagtagtcacattgggtttccatctgacaaaaagattcctcaaaattatatttacatgatttgctgcaatgtagcttttgctttgcacttgcagacca |
29348871 |
T |
|
| Q |
101 |
tagacaagtgtttgaaaccatgaaaacatggtttcaatattctcatcatccttcattttgaatagcccatgttgttggatcagaagatttgtcttggctt |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29348870 |
tagacaagtgtttgaaacca----aacatggtttcaatattgtcatcatccttcattttgaatagcccatgttgttggatcagaagatttgtcttggctt |
29348775 |
T |
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| Q |
201 |
cctttacttgttgatttccctcatatgtagagcaaattaaatttgtaaattgtttcaatatcctcaaggaagagaagagtattcaccatgatactttgag |
300 |
Q |
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|||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29348774 |
cctttacttgttgatttccctcatatgtagagcatagtagatttgtaaattgtttcaatatcctcaaggaagagaagagtattcaccatgatactttgag |
29348675 |
T |
|
| Q |
301 |
ttttatgatgtttcttgtaaggctttctctgctcctc |
337 |
Q |
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| T |
29348674 |
ttttatgatgtttcttgtaaggctttttatgctcctc |
29348638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 223
Target Start/End: Complemental strand, 16801250 - 16801067
Alignment:
| Q |
40 |
cctcaaaattatatttacatgatttgctgcaatgtagcttttgctttgcacttgcagatcatagacaagtgtttgaaaccatgaaaacatggtttcaata |
139 |
Q |
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||||||||| | ||||||||||||| | || ||||||||||| || ||||||||||| | |||||||||||||||||| |||||||||| |||||||| |
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| T |
16801250 |
cctcaaaatcttctttacatgatttgattcagtgtagcttttgattagcacttgcagacaagagacaagtgtttgaaaccttgaaaacatgatttcaata |
16801151 |
T |
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| Q |
140 |
ttctcatcatccttcattttgaatagcccatgttgttggatcagaagatttgtcttggcttcctttacttgttgatttccctca |
223 |
Q |
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| |||||||||||| ||| |||||| ||| |||||||| |||||| ||| ||| ||||| | |||| ||||||||||||| |
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| T |
16801150 |
tcttcatcatccttcgtttagaatagttcatattgttggactagaagagttgcctttccttccatcacttattgatttccctca |
16801067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 223
Target Start/End: Complemental strand, 16840536 - 16840353
Alignment:
| Q |
40 |
cctcaaaattatatttacatgatttgctgcaatgtagcttttgctttgcacttgcagatcatagacaagtgtttgaaaccatgaaaacatggtttcaata |
139 |
Q |
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||||||||| | ||||||||||||| | || ||||||||||| || ||||||||||| | |||||||||||||||||| |||||||||| |||||||| |
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| T |
16840536 |
cctcaaaatcttctttacatgatttgattcagtgtagcttttgattagcacttgcagacaagagacaagtgtttgaaaccttgaaaacatgatttcaata |
16840437 |
T |
|
| Q |
140 |
ttctcatcatccttcattttgaatagcccatgttgttggatcagaagatttgtcttggcttcctttacttgttgatttccctca |
223 |
Q |
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| |||||||||||| ||| |||||| ||| |||||||| |||||| ||| ||| ||||| | |||| ||||||||||||| |
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| T |
16840436 |
tcttcatcatccttcgtttagaatagttcatattgttggactagaagagttgcctttccttccatcacttattgatttccctca |
16840353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 16801051 - 16800999
Alignment:
| Q |
264 |
tcaaggaagagaagagtattcaccatgatactttgagttttatgatgtttctt |
316 |
Q |
| |
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|||| |||| |||||||||||||||||||||| || ||||||||||||||| |
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| T |
16801051 |
tcaacgaagggaagagtattcaccatgatactgcaagctttatgatgtttctt |
16800999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 102 - 234
Target Start/End: Complemental strand, 18085855 - 18085723
Alignment:
| Q |
102 |
agacaagtgtttgaaaccatgaaaacatggtttcaatattctcatcatccttcattttgaatagcccatgttgttggatcagaagatttgtcttggcttc |
201 |
Q |
| |
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|||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||||| | |||||||| ||||||||| |||| |||| |
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| T |
18085855 |
agacaagtgtttgaaaccttgaaaccatagtttcaatatcttcatcatccttcattttgaatagtttgtattgttggactagaagattttccttgacttc |
18085756 |
T |
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| Q |
202 |
ctttacttgttgatttccctcatatgtagagca |
234 |
Q |
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| T |
18085755 |
attcacttgttgatttccctcatatgtggagca |
18085723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 336
Target Start/End: Complemental strand, 18085666 - 18085598
Alignment:
| Q |
268 |
ggaagagaagagtattcaccatgatactttgagttttatgatgtttcttgtaaggctttctctgctcct |
336 |
Q |
| |
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||||| ||||| |||||||||||||||| | ||||||||||||||| ||| ||||| ||||||||| |
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| T |
18085666 |
ggaagggaagattattcaccatgatactacaaactttatgatgtttcttctaaagctttttctgctcct |
18085598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 11012641 - 11012542
Alignment:
| Q |
126 |
acatggtttcaatattctcatcatccttcattttgaatagcccatgttgttggatcagaagatttgtcttggcttcctttacttgttgatttccctcata |
225 |
Q |
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|||||| |||||||| |||||||||||||| |||| | | ||| |||||||| | |||||||||||| ||||||| |||||||||||||||||||| |
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| T |
11012641 |
acatggcttcaatatcgccatcatccttcattatgaacaactcatattgttggactataagatttgtcttatcttccttcacttgttgatttccctcata |
11012542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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