View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13498_high_24 (Length: 338)
Name: NF13498_high_24
Description: NF13498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13498_high_24 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 338
Target Start/End: Original strand, 50530151 - 50530481
Alignment:
| Q |
8 |
gagcacagaaaccggcaatggcgtaagatagaacaacggaagggccagcgtgaacacgggtagcgtggccagtggtgacgaagactccggcgccgaccat |
107 |
Q |
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| T |
50530151 |
gagcacagaaaccggcaatggcgtaagatagaacaacggaagggccagcgtgaacacgggtagcgtggccagtggtgacgaagactccggcgccgaccat |
50530250 |
T |
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| Q |
108 |
tccaccgataccaaagctgactaagtcaaaccaacggagggttttgcgcatgctgttaccggacctagctcgaacgcggctcatttcttcgtaagaagtg |
207 |
Q |
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| T |
50530251 |
tccaccgataccaaagctgactaagtcaaaccaacggaggcttttgcgcatgctgttgccggacctagctcgaacacggctcatttcttcgtaagaagtg |
50530350 |
T |
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| Q |
208 |
gagacggagaagccgcgacgagcaaagcgagagggagttttagcgacggcttggagatagtttgggaggctcgaaaacgatgagccatggcttgtcattg |
307 |
Q |
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| T |
50530351 |
gagacggagaagccgcgacgagcaaagcgagagggagttttagcgacggcttggagatagtttgggaggctcgaaaacgatgagccatggcttgtcattg |
50530450 |
T |
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| Q |
308 |
cgtgcgctctttggttttgtttttctgtgtg |
338 |
Q |
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| T |
50530451 |
cgtgcgctctttggttttgtttttctgtgtg |
50530481 |
T |
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