View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13498_high_25 (Length: 338)
Name: NF13498_high_25
Description: NF13498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13498_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 35508179 - 35507987
Alignment:
| Q |
20 |
atggggggttcggtgcgagacgtgaagtcaaagtcggagttggatgaggttgttcgcggcggttctccggcggtgcttcacttctgggcgtcatggtgtg |
119 |
Q |
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| T |
35508179 |
atgggtggttcggtgcgagacgtgaagtcaaagtcggagttggatgaggtggttcgcggcggttctccggcggtgcttcacttctgggcgtcatggtgtg |
35508080 |
T |
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| Q |
120 |
aagcttccaaacacatggaccaactcttctctcatttggccattgatttccctcatacccatttcttaagggttcggttttctttcccaatta |
212 |
Q |
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| T |
35508079 |
aagcttccaaacacatggaccaactcttctctcatttggccattgatttccctcatacccatttcttaagggttcggttttctttcccaatta |
35507987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 35507920 - 35507863
Alignment:
| Q |
279 |
ggttgaagctgaagaacaaccagagatatctgaggcttattctgtctctgctgctcct |
336 |
Q |
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| T |
35507920 |
ggttgaagctgaagaacaaccagagatatctgaggcttattctgtctctgctgttcct |
35507863 |
T |
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