View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13498_high_29 (Length: 331)
Name: NF13498_high_29
Description: NF13498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13498_high_29 |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 118 - 313
Target Start/End: Original strand, 15323752 - 15323947
Alignment:
| Q |
118 |
cttgtgtttgcttccttttcgaggggtgatagagaattgacacatgttgtggagaagtttgtattcctttttgagatttgtagagatcagatcatcatca |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
15323752 |
cttgtgtttgcttccttttcgaggagtgatagagaattgacacatgttgtggagaagtttgtattcctttttgagatttgcagaaatcagatcatcatca |
15323851 |
T |
|
| Q |
218 |
gattcatacttaacaaacatttctcgaatgatgtcaaagcgtgacactacatcatttgcatatcctgttcttccatagcattttggccctttctga |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15323852 |
gattcatacttaacaaacatttctcgaatgatgtcaaagcgagacactacagcatttgcatatcctgttcttccatagcattttggtcctttctga |
15323947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 118 - 313
Target Start/End: Complemental strand, 18715017 - 18714822
Alignment:
| Q |
118 |
cttgtgtttgcttccttttcgaggggtgatagagaattgacacatgttgtggagaagtttgtattcctttttgagatttgtagagatcagatcatcatca |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
18715017 |
cttgtgtttgcttccttttcgaggagtgatagagaattgacacatgttgtggagaagtttgtattcctttttgagatttgcagaaatcagatcatcatca |
18714918 |
T |
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| Q |
218 |
gattcatacttaacaaacatttctcgaatgatgtcaaagcgtgacactacatcatttgcatatcctgttcttccatagcattttggccctttctga |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
18714917 |
gattcatacttaacaaacatttctcgaatgatgtcaaagcgagacactacagcatttgcatatcctgttcttccatagcattttggtcctttctga |
18714822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 15322899 - 15323014
Alignment:
| Q |
5 |
gagcagcagagaggttagccattgtcagatggagtggtggaggcacattgcgagagccagctgaagcgtcaggagtgttgggtggagctggtggtggtcc |
104 |
Q |
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||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15322899 |
gagcagcagtgaggtcagccattgtcagatggggtggtggaggcacattgcgagagccagctgaagcgtcaggagtgttgggtggagctggtggtggtcc |
15322998 |
T |
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| Q |
105 |
gtattgaccaaagctt |
120 |
Q |
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|||||||||| ||||| |
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| T |
15322999 |
gtattgaccagagctt |
15323014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 18715870 - 18715755
Alignment:
| Q |
5 |
gagcagcagagaggttagccattgtcagatggagtggtggaggcacattgcgagagccagctgaagcgtcaggagtgttgggtggagctggtggtggtcc |
104 |
Q |
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||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18715870 |
gagcagcagtgaggtcagccattgtcagatggggtggtggaggcacattgcgagagccagctgaagcgtcaggagtgttgggtggagctggtggtggtcc |
18715771 |
T |
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| Q |
105 |
gtattgaccaaagctt |
120 |
Q |
| |
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|||||||||| ||||| |
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| T |
18715770 |
gtattgaccagagctt |
18715755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 118 - 313
Target Start/End: Original strand, 78258 - 78453
Alignment:
| Q |
118 |
cttgtgtttgcttccttttcgaggggtgatagagaattgacacatgttgtggagaagtttgtattcctttttgagatttgtagagatcagatcatcatca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
78258 |
cttgtgtttgcttccttttcgaggggtgatagaaaattgacacatgttatggagaagtttgtattcctttttgagatttgcagaaatcagatcatcatca |
78357 |
T |
|
| Q |
218 |
gattcatacttaacaaacatttctcgaatgatgtcaaagcgtgacactacatcatttgcatatcctgttcttccatagcattttggccctttctga |
313 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||| || ||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
78358 |
gattcatacttaacaaacatttctcgaatgatgtcaaaacgtgataccacagcatttgcatatcctgttcttccatagcatttcggccctttctga |
78453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 77405 - 77520
Alignment:
| Q |
5 |
gagcagcagagaggttagccattgtcagatggagtggtggaggcacattgcgagagccagctgaagcgtcaggagtgttgggtggagctggtggtggtcc |
104 |
Q |
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||||||||| ||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77405 |
gagcagcagtgaggtcagccattgtcagatggggtggtggcggcacattgcgagagccagctgaagcgtcaggagtgttgggtggagctggtggtggtcc |
77504 |
T |
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| Q |
105 |
gtattgaccaaagctt |
120 |
Q |
| |
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||||| ||| ||||| |
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| T |
77505 |
atattggccagagctt |
77520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 122 - 313
Target Start/End: Complemental strand, 14939323 - 14939132
Alignment:
| Q |
122 |
tgtttgcttccttttcgaggggtgatagagaattgacacatgttgtggagaagtttgtattcctttttgagatttgtagagatcagatcatcatcagatt |
221 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14939323 |
tgtttgcttccttttcgaggggtgatagaaaattgacacatgttatggagaagtttgtattcctttttgagatttgcagagatcagatcatcatcagatt |
14939224 |
T |
|
| Q |
222 |
catacttaacaaacatttctcgaatgatgtcaaagcgtgacactacatcatttgcatatcctgttcttccatagcattttggccctttctga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| || ||| ||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
14939223 |
catacttaacaaacatttctcgaatgatgtcaaaacgtgataccacagcattttcatatcctgttcttccatagcatttcggccctttctga |
14939132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 14940180 - 14940065
Alignment:
| Q |
5 |
gagcagcagagaggttagccattgtcagatggagtggtggaggcacattgcgagagccagctgaagcgtcaggagtgttgggtggagctggtggtggtcc |
104 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14940180 |
gagcagcagtgaggtcagccattgtcagatggggtggtggcggcacattgcgagagccagctgaagcgtcaggagtgttgggtggagctggtggtggtcc |
14940081 |
T |
|
| Q |
105 |
gtattgaccaaagctt |
120 |
Q |
| |
|
||||| ||| ||||| |
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|
| T |
14940080 |
atattggccagagctt |
14940065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 118 - 313
Target Start/End: Original strand, 45492187 - 45492382
Alignment:
| Q |
118 |
cttgtgtttgcttccttttcgaggggtgatagagaattgacacatgttgtggagaagtttgtattcctttttgagatttgtagagatcagatcatcatca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||| |||| |
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| T |
45492187 |
cttgtgtttgcttccttttcgaggggtgatagaaaattgacacatgttatggagaagtttgtattcctttttgagatttgcagaaatcagatcattatca |
45492286 |
T |
|
| Q |
218 |
gattcatacttaacaaacatttctcgaatgatgtcaaagcgtgacactacatcatttgcatatcctgttcttccatagcattttggccctttctga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45492287 |
gattcatacttaacaaacatttctcgaatgatgtcaaaacgtgataccccagcatttgcatatcctgttcttccatagcatttcagccctttctga |
45492382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 45491334 - 45491449
Alignment:
| Q |
5 |
gagcagcagagaggttagccattgtcagatggagtggtggaggcacattgcgagagccagctgaagcgtcaggagtgttgggtggagctggtggtggtcc |
104 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45491334 |
gagcagcagtgaggtcagccattgtcagatggggtggtggcggcacattgcgagagccagctgaagcgtcaggagtgttgggtggagctggtggtggtcc |
45491433 |
T |
|
| Q |
105 |
gtattgaccaaagctt |
120 |
Q |
| |
|
||||| ||| ||||| |
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| T |
45491434 |
atattggccagagctt |
45491449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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