View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13498_high_39 (Length: 316)
Name: NF13498_high_39
Description: NF13498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13498_high_39 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 195 - 316
Target Start/End: Original strand, 25933413 - 25933534
Alignment:
| Q |
195 |
caagcaggtaatcctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttctt |
294 |
Q |
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| T |
25933413 |
caagcaggtaattctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttctt |
25933512 |
T |
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| Q |
295 |
ttgactctgttgttgagggttg |
316 |
Q |
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|||||||||||||||||||||| |
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| T |
25933513 |
ttgactctgttgttgagggttg |
25933534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 195 - 316
Target Start/End: Original strand, 26100932 - 26101053
Alignment:
| Q |
195 |
caagcaggtaatcctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttctt |
294 |
Q |
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||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26100932 |
caagcaggtaatcctaaaaaggttgaccacttgcttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcct |
26101031 |
T |
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| Q |
295 |
ttgactctgttgttgagggttg |
316 |
Q |
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|||||||||||||||||||||| |
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| T |
26101032 |
ttgactctgttgttgagggttg |
26101053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 25933210 - 25933329
Alignment:
| Q |
16 |
gtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctacttcaacgtggttacactgtcagagccactgttcgtcatccaa |
115 |
Q |
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| T |
25933210 |
gtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctccttcaatgtggttacactgtcagagcaactgttcgtcacccaa |
25933309 |
T |
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| Q |
116 |
gtcagtacttctttttcctt |
135 |
Q |
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| T |
25933310 |
gtcagtgcttctttctcctt |
25933329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 26100713 - 26100849
Alignment:
| Q |
12 |
aaaggtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctacttcaacgtggttacactgtcagagccactgttcgtcat |
111 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||| ||| | |
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| T |
26100713 |
aaaggtggtgtgtgtgacaggtgcttctggttttatagcttcatggattgtcaagttcctactccaacgtggttacactgtccgagccactgtccgtgac |
26100812 |
T |
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| Q |
112 |
ccaagtcagtacttctttttccttcaaattctttctc |
148 |
Q |
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| T |
26100813 |
ccaagtatgtgcatgtttttccttcaacttctttctc |
26100849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 213 - 305
Target Start/End: Original strand, 29548958 - 29549050
Alignment:
| Q |
213 |
aaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcttttgactctgtt |
305 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||| ||||| |||||| |
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| T |
29548958 |
aaggttgatcacttgcttaaacttgatggtgcaaaggaaaggttgcaactctttaaggcagatttacttgaagaaggttcctttgattctgtt |
29549050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 29548743 - 29548865
Alignment:
| Q |
13 |
aaggtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctacttcaacgtggttacactgtcagagccactgttcgtcatc |
112 |
Q |
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| T |
29548743 |
aaggttgtgtgtgtaacaggtgcttcaggtttcattgcttcatgggttgtcaagtttcttctccaacgtggttatactgttagagccactgttcgtgacc |
29548842 |
T |
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| Q |
113 |
caagtcagtacttctttttcctt |
135 |
Q |
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| T |
29548843 |
ctagtcagtgcttctttctcctt |
29548865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 29554909 - 29555019
Alignment:
| Q |
12 |
aaaggtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctacttcaacgtggttacactgtcagagccactgttcgtcat |
111 |
Q |
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||||||||| ||||| || |||||| |||| ||||||||||||| |||| || ||||| |||||||||||||||||||| ||||||||||||||| || |
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| T |
29554909 |
aaaggtggtttgtgtaactggtgcttcaggttatattgcttcatggcttgtcaaatttctccttcaacgtggttacactgttagagccactgttcgtgat |
29555008 |
T |
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| Q |
112 |
ccaagtcagta |
122 |
Q |
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|||||| |||| |
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| T |
29555009 |
ccaagttagta |
29555019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 299
Target Start/End: Original strand, 29555154 - 29555253
Alignment:
| Q |
200 |
aggtaatcctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcttttgac |
299 |
Q |
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|||||||||| | |||||||| || || |||||||||||||||| ||||| |||||||| ||||| ||||||||||| || ||||||||||| |||||| |
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| T |
29555154 |
aggtaatcctaataaggttgaccatttacttaaacttgatggtgctaaggaaaggttgcacctcttcaaggcagatctattagaagaaggttcatttgac |
29555253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 29559125 - 29559194
Alignment:
| Q |
12 |
aaaggtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctacttcaacgt |
81 |
Q |
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|||||| |||||||| ||||||| | |||| ||||||||||||| ||||||||||||| || |||||| |
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| T |
29559125 |
aaaggttgtgtgtgtaacaggtggttcaggttatattgcttcatggcttgttaagtttcttctccaacgt |
29559194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 308
Target Start/End: Original strand, 87805 - 87900
Alignment:
| Q |
213 |
aaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcttttgactctgttgtt |
308 |
Q |
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|||||||| ||||||||||| ||||||||||| |||||||| |||||||| || |||||| |||| | ||||||||| | ||||| ||||||||| |
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| T |
87805 |
aaggttgaccacttggttaagcttgatggtgctaaggagagattgcaactgttcaaggcaaatctacttgaagaaggtgcctttgattctgttgtt |
87900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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