View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13498_high_4 (Length: 595)
Name: NF13498_high_4
Description: NF13498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13498_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 32 - 534
Target Start/End: Original strand, 6016911 - 6017414
Alignment:
| Q |
32 |
gggagggcttaaaactatcttactggtagtacaaaaattacatcgttttatgataacctcaaactcaaacttcgtaaggatggctctagtatattattta |
131 |
Q |
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| T |
6016911 |
gggagggcttaaaactatcttactggtagtacaaaaattacatcgttttatgataacctcaaactcaaacttcgtaaggatggctctagtatattattta |
6017010 |
T |
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| Q |
132 |
atcttttagttgataaaa-aggtttcaatgaaaaatatggtgatttcgagtggtttggaagaggagctggagttgaagaaatcgtttattttcttgcgag |
230 |
Q |
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| T |
6017011 |
atcttttagttgataaaaaaggtttcaatgaaaaatatggtgatttcgagtggtttggaagaggagctggagttgaagaagtggtttattttcctgcgag |
6017110 |
T |
|
| Q |
231 |
gaagagttagttgaggggtgtaaggacttaaaactatcctatatttaaaagtggaggtcgtaaaaaatatagcatcgctttcttgtaaactcaaactttg |
330 |
Q |
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| T |
6017111 |
gaagagttagttgaggggtataaggacttaaaactatcctatatttaaaagtggaggtcgtaaaaaaaatagcatcgctttcttgtaaattcaaactttg |
6017210 |
T |
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| Q |
331 |
taatgattatttagtagactacttgatctttcaattgattaaaaggcttcgatgaagaatacaatgatcatttagtagactacttgatcttcaaatattt |
430 |
Q |
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| T |
6017211 |
taatgatcatttagtagactacttgatctttcaattgataaaaaggcttcgatgaagaatacaatgatcatttagtagactacttgatcttcaaatattt |
6017310 |
T |
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| Q |
431 |
ttctcaaagtcattgtcacttacccggacaatgctttgatgaatgttgttgagacaattttctcagtatactgctctattgtatgagtatcacatcttta |
530 |
Q |
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| T |
6017311 |
ttctcatagtcattgtcacttacaaggacaatgctttgatgaatgttgttgagacaattttttcagtgtactgctctattgtatgagtatcacatcttta |
6017410 |
T |
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| Q |
531 |
aaaa |
534 |
Q |
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|||| |
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| T |
6017411 |
aaaa |
6017414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 457 - 526
Target Start/End: Original strand, 12839993 - 12840064
Alignment:
| Q |
457 |
gacaatgctttgatgaatgttgttgagacaattttctc--agtatactgctctattgtatgagtatcacatc |
526 |
Q |
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|||||||||||||||||||||||||| ||||||||| | || |||||||||| |||| ||||| ||||||| |
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| T |
12839993 |
gacaatgctttgatgaatgttgttgatacaattttcccgaaggatactgctctgttgtgtgagtttcacatc |
12840064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 6170352 - 6170420
Alignment:
| Q |
118 |
tagtatattatttaatcttttagttgataaaaaggtttcaatgaaaaatatggtgatttcgagtggttt |
186 |
Q |
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| T |
6170352 |
tagtagatcatttaatctttaaattgataaaaatgtttcagttaataatgtggtgatttcgagtggttt |
6170420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 482
Target Start/End: Complemental strand, 16041784 - 16041737
Alignment:
| Q |
435 |
caaagtcattgtcacttacccggacaatgctttgatgaatgttgttga |
482 |
Q |
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| T |
16041784 |
caaagtcattgtcattgatcgggacaatgctttgatgaatgttgttga |
16041737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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