View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13498_high_41 (Length: 307)
Name: NF13498_high_41
Description: NF13498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13498_high_41 |
 | |
|
| [»] scaffold0145 (1 HSPs) |
| | |
|
| [»] scaffold1001 (1 HSPs) |
| | |
|
| [»] scaffold0094 (1 HSPs) |
| | |
|
| [»] scaffold0290 (1 HSPs) |
| | |
|
| [»] scaffold0385 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0145 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: scaffold0145
Description:
Target: scaffold0145; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 3 - 286
Target Start/End: Complemental strand, 12835 - 12552
Alignment:
| Q |
3 |
ggataaagtatatagaaggccttgaatagatgagagaatagagtacgtctgtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12835 |
ggataaagtatatagaaggccttgaatagatgagagaatagagtacgtctgtgagatgaatactaaaataaaataaatggatgttggcatagaatgagtc |
12736 |
T |
|
| Q |
103 |
acgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgac |
202 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12735 |
acgcgtaaggtgtggaataacgacaagataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactatgacagagagtaatgac |
12636 |
T |
|
| Q |
203 |
gagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12635 |
gagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttatattataataatgatgagaatgatgatgtc |
12552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 16284880 - 16285165
Alignment:
| Q |
1 |
ggggataaagtatatagaaggccttgaatagatgagagaatagagtacgtctgtgagatgaatactaaaataaaataaatggatgttagcatagaatgag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16284880 |
ggggataaagtatatagaaggccttgaatagatgagagaatagagtacgtctgtgagatgaatactaaaataaaataaatggatgttggcatagaatgag |
16284979 |
T |
|
| Q |
101 |
tcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16284980 |
tcacgcgtaaggtgtggaataacgacaagataaggtggtgatataagtggatgataaagagtaatgatggggagtcctataactatgacagagagtaatg |
16285079 |
T |
|
| Q |
201 |
acgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16285080 |
acgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttatattataataatgatgagaatgatgatgtc |
16285165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 129 - 286
Target Start/End: Original strand, 18231449 - 18231604
Alignment:
| Q |
129 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
228 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||||| ||| ||| ||| || ||||| ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
18231449 |
gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcc-ata-ctgtaacaaagagtgatgacgattaatattatatatatgtaaagaa |
18231546 |
T |
|
| Q |
229 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
286 |
Q |
| |
|
||||||||||| | ||||||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
18231547 |
attactacgatagaaaatgatgatgttatattataataatgatgagaatgacgatgtc |
18231604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 129 - 285
Target Start/End: Complemental strand, 11556070 - 11555916
Alignment:
| Q |
129 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
228 |
Q |
| |
|
|||||||||||||||||| || ||||| |||||||||||| || ||| ||| || | ||| ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
11556070 |
gataaggtggtgatataaatggttgatagagagtaatgatgatgaatcc-ata-ctgtcacaaagagtgatgacgattaatattatatatatgtaaagaa |
11555973 |
T |
|
| Q |
229 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgt |
285 |
Q |
| |
|
||||||||||| ||||||| ||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
11555972 |
attactacgataggaaatgttgatgttatattataataatgatgagaatgacgatgt |
11555916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 272
Target Start/End: Original strand, 11098355 - 11098468
Alignment:
| Q |
159 |
gagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgta |
258 |
Q |
| |
|
||||||||||| |||||||||||| | ||| |||||| ||||||| |||||||||||||||||||||||||||||| |||||||| |||| || || |
|
|
| T |
11098355 |
gagtaatgatgaggagtcctataattgtaatggagagtgatgacgattaatattatatatatgtaaagaaattactattgtgggaaataatgatgttata |
11098454 |
T |
|
| Q |
259 |
ttataataatgatg |
272 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11098455 |
ttataataatgatg |
11098468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 11098243 - 11098356
Alignment:
| Q |
5 |
ataaagtatatagaaggccttgaatagatgagagaatagagtacgtctgtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcac |
104 |
Q |
| |
|
|||||||||||||| ||||| ||||| || |||||||| ||||||| ||||||||||||| |||| ||||||||| ||||||| | || || ||||||| |
|
|
| T |
11098243 |
ataaagtatatagagggcctagaatatattagagaatatagtacgtatgtgagatgaataataaagtaaaataaagggatgttgacgtataaggagtcac |
11098342 |
T |
|
| Q |
105 |
gcgtaaggtgtgga |
118 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
11098343 |
gcataaggtgtgga |
11098356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 18556760 - 18556837
Alignment:
| Q |
5 |
ataaagtatatagaaggccttgaatagatgagagaatagagtacgtctgtgagatgaatactaaaataaaataaatgg |
82 |
Q |
| |
|
|||||||||||| | ||| |||||||||||||||||| ||| |||||||| ||| ||| |||||||||||| |||| |
|
|
| T |
18556760 |
ataaagtatatatagatcctagaatagatgagagaatagggtatgtctgtgatatggataataaaataaaatagatgg |
18556837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 15890295 - 15890368
Alignment:
| Q |
6 |
taaagtatatagaaggccttgaatagatgagagaatagagtacgtctgtgagatgaatactaaaataaaataaa |
79 |
Q |
| |
|
||||||||||||| |||| |||||||||| | |||||||| ||| || ||||||||| || ||||||||||| |
|
|
| T |
15890295 |
taaagtatatagagagcctagaatagatgaagggatagagtatgtcggtaagatgaataatataataaaataaa |
15890368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 29 - 286
Target Start/End: Original strand, 10641192 - 10641449
Alignment:
| Q |
29 |
tagatgagagaatagagtacgtctgtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacag |
128 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||||||| ||||||||| |||||||||||| || ||||||||||||| ||| ||| ||||| ||| || |
|
|
| T |
10641192 |
tagatgagagaataaagtacatatgtgagatgaataataaaataaagtaaatggatgttggcgtagaatgagtcacacgtgaggcgtggattaatgaaga |
10641291 |
T |
|
| Q |
129 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| | |||||||||||||| | |||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
10641292 |
gataaggtggtgatataagcggatgatagagagtaatgacgaggagtcctataactgtgacagagagcgatgacgattaatattatatatatgtaaagaa |
10641391 |
T |
|
| Q |
229 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
286 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
10641392 |
attactacgatgggaaattatgaggttatattataataatgatgagaatgatgatgtc |
10641449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 5 - 286
Target Start/End: Complemental strand, 14970343 - 14970060
Alignment:
| Q |
5 |
ataaagtatatagaaggccttgaatagatgagagaatagagtacgtctgtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcac |
104 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||||||||||||| ||| ||||| ||||| |||||||||||||| | ||||| ||||||||||||| |
|
|
| T |
14970343 |
ataaagtatatagagggcctagaatagataagagaatagagtacctctctgagaagaataataaaataaaataaaggaatgttgatgtagaatgagtcac |
14970244 |
T |
|
| Q |
105 |
gcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacga |
204 |
Q |
| |
|
||||| ||||||| ||| || ||||| |||||||||||| |||||||| |||||||||||| ||||||||| |||| | ||| ||| | |||||| |
|
|
| T |
14970243 |
tcgtaaagtgtggattaatgaagagataaagtggtgatataaatggatgatagagagtaatgatgaggagtcctacaactgtgacaaagaatgatgacgg |
14970144 |
T |
|
| Q |
205 |
gtaatattatat--atatgtaaagaaattactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
286 |
Q |
| |
|
||||||||||| |||| || ||||||||| |||||||||||||||| || ||||||||||| |||||||||| |||||| |
|
|
| T |
14970143 |
ttaatattatatatatatttatagaaattaccgcgatgggaaatgatgatgttatattataataacaatgagaatgacgatgtc |
14970060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 286
Target Start/End: Original strand, 10906573 - 10906854
Alignment:
| Q |
6 |
taaagtatatagaaggccttgaatagatgagagaatagagtacgtctgtgagatgaatactaaaataaaataaatggatgttagcatagaa-tgagtcac |
104 |
Q |
| |
|
|||||| |||||| || || ||||||| || ||||||||||| ||| || | | ||||| |||||||||||| | |||| || | ||||| |||| ||| |
|
|
| T |
10906573 |
taaagtgtatagagggtctagaatagacgaaagaatagagtatgtccgtaaaacgaataataaaataaaatagagggatattgacgtagaaatgagccac |
10906672 |
T |
|
| Q |
105 |
gcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacga |
204 |
Q |
| |
|
|||||| |||| ||| || | |||||||||||||||| ||| ||| |||||||||||| | ||| |||||||||| ||||||||| | | | |
|
|
| T |
10906673 |
atgtaagggttggattaatgaataggtaaggtggtgatataaacggttgacaaagagtaatgacgaggaatcctataactgcgacagagagtgaaggggg |
10906772 |
T |
|
| Q |
205 |
gtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
286 |
Q |
| |
|
||||||||| ||||||| || | || | || |||| |||||||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
10906773 |
ttaatattatgtatatgtcaacatataaataggatgtgaaatgatgatgttatattataataatgatgagaatgacgatgtc |
10906854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 245
Target Start/End: Complemental strand, 9191181 - 9191065
Alignment:
| Q |
129 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
228 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||||| ||| |||||||||| | | | ||||| |||| || | |||| |||||||||| || || |
|
|
| T |
9191181 |
gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcctataactgtgataaagagtgatgatgattgatataatatatatgtgaataa |
9191082 |
T |
|
| Q |
229 |
attactacgatgggaaa |
245 |
Q |
| |
|
|| | ||||||| |||| |
|
|
| T |
9191081 |
ataaatacgatgagaaa |
9191065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 19547185 - 19547262
Alignment:
| Q |
5 |
ataaagtatatagaaggccttgaatagatgagagaatagagtacgtctgtgagatgaatactaaaataaaataaatgg |
82 |
Q |
| |
|
|||||||||||| | ||| |||||||||||||||||| ||| |||||||||||| ||| |||||||||||| |||| |
|
|
| T |
19547185 |
ataaagtatatatagatcctagaatagatgagagaatagggtatgtctgtgagatggataataaaataaaatagatgg |
19547262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 8403638 - 8403711
Alignment:
| Q |
6 |
taaagtatatagaaggccttgaatagatgagagaatagagtacgtctgtgagatgaatactaaaataaaataaa |
79 |
Q |
| |
|
||||||||||||| || | ||||||||| | |||||||| |||||| ||||||||| |||||||||||||| |
|
|
| T |
8403638 |
taaagtatatagagagcttgtaatagatgatgggatagagtatgtctgtaagatgaataataaaataaaataaa |
8403711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 2 - 286
Target Start/End: Original strand, 24831871 - 24832161
Alignment:
| Q |
2 |
gggataaagtatatagaaggccttgaatagatgagagaatagagtacgtctgtgagatgaatactaaaataaaataaatggatgttagcatagaatgagt |
101 |
Q |
| |
|
||||||||||||||| | ||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||| ||||||| || |||||||||| |
|
|
| T |
24831871 |
gggataaagtatatatagggccttgaatagaagagagaatagagtatgtctgtgagatgaataataaaataaaataaagggatgttggcgtagaatgagt |
24831970 |
T |
|
| Q |
102 |
cacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatga |
201 |
Q |
| |
|
||||||||||| || || ||| || |||| | ||||||| ||||||||||||| |||||||||||| |||||||||||| | | ||| ||||| |||| |
|
|
| T |
24831971 |
cacgcgtaaggagttgactaatgaagagatacgatggtgatgtaagcggatgatagagagtaatgatgaggagtcctataattgtgacaaagagtgatga |
24832070 |
T |
|
| Q |
202 |
cgagtaatattat------atatatgtaaagaaattactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
286 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||| ||||||||||| || || ||||||| |||||||||||| |||||| |
|
|
| T |
24832071 |
tgattaatattatatatacatatatgtaaagaaattactacgatgagaaatgatgaggttatactataatattgatgagaatgacgatgtc |
24832161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 270
Target Start/End: Complemental strand, 13935849 - 13935715
Alignment:
| Q |
135 |
gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattact |
234 |
Q |
| |
|
|||||||||||| ||| ||||| ||||||||||| ||| ||||||||| | ||| ||||| ||||| | | ||| ||||| |||||||| ||| | | |
|
|
| T |
13935849 |
gtggtgatataaacggttgatagagagtaatgattaggaatcctataacggtgacaaagagtgatgacaattgatactatatctatgtaaatgaataaat |
13935750 |
T |
|
| Q |
235 |
acgatgggaaatgatgagtttgtattataataatga |
270 |
Q |
| |
|
||||| |||||| |||| || |||||||||||||| |
|
|
| T |
13935749 |
acgat-ggaaataatgatgttatattataataatga |
13935715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 2 - 286
Target Start/End: Original strand, 14481471 - 14481761
Alignment:
| Q |
2 |
gggataaagtatatagaaggccttgaatagatgagagaatagagtacgtctgtgagatgaatactaaaataaaataaatggatgttagcatagaatgagt |
101 |
Q |
| |
|
||||||||||||||| | || ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||| || |||||||||| |
|
|
| T |
14481471 |
gggataaagtatatatagggtcttgaatagatgagagaatagagtatgtctgtgagatgaataataaaataaaataaagggatgttggcgtagaatgagt |
14481570 |
T |
|
| Q |
102 |
cacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatga |
201 |
Q |
| |
|
||||||||||| ||||| ||| || |||| ||||||| ||||||||||||| |||||||||||| |||||||||||||| | ||| ||||| |||| |
|
|
| T |
14481571 |
cacgcgtaaggagtggattaatgaagagatacaatggtgatgtaagcggatgatagagagtaatgatgaggagtcctataactgtgacaaagagtgatga |
14481670 |
T |
|
| Q |
202 |
cgagtaatat------tatatatatgtaaagaaattactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
286 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||| |||||||| || || ||||||| ||||||| |||| |||||| |
|
|
| T |
14481671 |
tgattaatattatatatatatatatgtaaagaaattactacgatgggacatgatgaggttatactataatattgatgaggatgacgatgtc |
14481761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 17791155 - 17790941
Alignment:
| Q |
6 |
taaagtatatagaaggccttgaatagatgagagaatagagtacgtctgtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacg |
105 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||||||||| | |||||| |||||| || ||||| |||| |||||| ||| ||||||||| |||| |
|
|
| T |
17791155 |
taaattatatagagggcctcgaatagatgagagaatagagtatgcttgtgaggtgaataatacgataaagtaaagggatgtcagcgtagaatgagccacg |
17791056 |
T |
|
| Q |
106 |
cgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgag |
205 |
Q |
| |
|
|||| ||||||| ||| || ||||||||| || ||||||||||||| | |||||||||||| |||||||||||||| | ||||||||| |||| || |
|
|
| T |
17791055 |
agtaaagtgtggattaatgaagagataaggtgatggtataagcggatgaaagagagtaatgatgaggagtcctataactttgacagagagtgatgatgat |
17790956 |
T |
|
| Q |
206 |
taatattatatatat |
220 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
17790955 |
taatattatatatat |
17790941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 19099595 - 19099381
Alignment:
| Q |
6 |
taaagtatatagaaggccttgaatagatgagagaatagagtacgtctgtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacg |
105 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||||||||| | |||||| |||||| || ||||| |||| |||||| ||| ||||||||| |||| |
|
|
| T |
19099595 |
taaattatatagagggcctcgaatagatgagagaatagagtatgcttgtgaggtgaataatacgataaagtaaagggatgtcagcgtagaatgagccacg |
19099496 |
T |
|
| Q |
106 |
cgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgag |
205 |
Q |
| |
|
|||| ||||||| ||| || ||||||||| || ||||||||||||| | |||||||||||| |||||||||||||| | ||||||||| |||| || |
|
|
| T |
19099495 |
agtaaagtgtggattaatgaagagataaggtgatggtataagcggatgaaagagagtaatgatgaggagtcctataactttgacagagagtgatgatgat |
19099396 |
T |
|
| Q |
206 |
taatattatatatat |
220 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
19099395 |
taatattatatatat |
19099381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 22159931 - 22159871
Alignment:
| Q |
136 |
tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt |
196 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||| ||| |||||||||||| ||| ||||| |
|
|
| T |
22159931 |
tggtgatataaacggttgatagagagtaatgatgaggaatcctataactatgacaaagagt |
22159871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 27870357 - 27870429
Alignment:
| Q |
5 |
ataaagtatatagaaggccttgaatagatgagagaatagagtacgtctgtgagatgaatactaaaataaaata |
77 |
Q |
| |
|
|||||||||||| | ||| |||||||||||| ||||||||| ||||||||||| ||| |||||||||||| |
|
|
| T |
27870357 |
ataaagtatatatagatcctagaatagatgagaaaatagagtatgtctgtgagatagataataaaataaaata |
27870429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 5943813 - 5943874
Alignment:
| Q |
26 |
gaatagatgagagaatagagtacgtctgtgagatgaatactaaaataaaataaatggatgtt |
87 |
Q |
| |
|
|||||||||||| ||||||||| ||| | ||||||||| |||||||||||| | ||||||| |
|
|
| T |
5943813 |
gaatagatgagaaaatagagtatgtccataagatgaataataaaataaaatagagggatgtt |
5943874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 21975335 - 21975275
Alignment:
| Q |
136 |
tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt |
196 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||| ||| ||| |||||||| ||| ||||| |
|
|
| T |
21975335 |
tggtgatataaacggttgatagagagtaatgatgaggaatccaataactatgacaaagagt |
21975275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 21997766 - 21997706
Alignment:
| Q |
136 |
tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt |
196 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||| ||| ||| |||||||| ||| ||||| |
|
|
| T |
21997766 |
tggtgatataaacggttgatagagagtaatgatgaggaatccaataactatgacaaagagt |
21997706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 129 - 285
Target Start/End: Original strand, 22614701 - 22614857
Alignment:
| Q |
129 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
22614701 |
gataaggtggtgatataagcggatgatagagagtattgatgaggagtcctataactatgacagagagtgatgacgattaatattatatatatgtaaagaa |
22614800 |
T |
|
| Q |
229 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgt |
285 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||| |||||||| ||||| |
|
|
| T |
22614801 |
attactacgatgggaaatgatgaggttatattataataatgaagagaatgacgatgt |
22614857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 5 - 286
Target Start/End: Complemental strand, 20026251 - 20025970
Alignment:
| Q |
5 |
ataaagtatatagaaggccttgaatagatgagagaatagagtacgtctgtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcac |
104 |
Q |
| |
|
|||||||||||| | ||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||| |||||| ||||||| | | |||||||||| |
|
|
| T |
20026251 |
ataaagtatatatagggcctagaatagatgagagaatatagtacgtctgtaagatgaataataaaatagaataaagggatgttgacgtcaaatgagtcac |
20026152 |
T |
|
| Q |
105 |
gcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacga |
204 |
Q |
| |
|
||||||||||| || ||| || |||||||| ||||||||| | |||||| ||| |||||| | ||||||||| |||||| ||| ||||| ||||||| |
|
|
| T |
20026151 |
gcgtaaggtgttgattaatgaagagataaggttgtgatataaacatatgatagagaataatgaagaggagtcctacaactatgacaaagagtgatgacga |
20026052 |
T |
|
| Q |
205 |
gtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
286 |
Q |
| |
|
| |||||||||||||||||||||||||| | ||||| ||||||||| || ||||||||||| |||| |||||||||||| |
|
|
| T |
20026051 |
ttcatattatatatatgtaaagaaattaccatgatggcaaatgatgatgttatattataataacaatgacaatgatgatgtc |
20025970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 129 - 286
Target Start/End: Complemental strand, 11655631 - 11655474
Alignment:
| Q |
129 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||| ||||||||||| || | ||||||||| | || || ||||||||||||||||||||||| |
|
|
| T |
11655631 |
gataaggtggtgatataagcggatgataaagaatattgatgaggagtcctatagctgtgacagagagtgacgatgattaatattatatatatgtaaagaa |
11655532 |
T |
|
| Q |
229 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
286 |
Q |
| |
|
||||||||||||| |||||||||| || |||||||||||||| |||||||| |||||| |
|
|
| T |
11655531 |
attactacgatggaaaatgatgaggttatattataataatgaagagaatgacgatgtc |
11655474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 272
Target Start/End: Original strand, 13477489 - 13477596
Alignment:
| Q |
171 |
ggagtcctataactataacagagagtaatgacgagtaatattata------tatatgtaaagaaattactacgatgggaaatgatgagtttgtattataa |
264 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||| |||||||||| |||||||||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
13477489 |
ggagtcctataactgtaacaaagagtgatgacgattaatattatatatatatatatgtaaagaaattactacgatgggaaaggatgatgttatattataa |
13477588 |
T |
|
| Q |
265 |
taatgatg |
272 |
Q |
| |
|
|||||||| |
|
|
| T |
13477589 |
taatgatg |
13477596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 230
Target Start/End: Original strand, 4531649 - 4531820
Alignment:
| Q |
58 |
atgaatactaaaataaaataaatggatgttagcatagaa-tgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgata |
156 |
Q |
| |
|
||||||| |||||||||||| | || |||| || || || ||||||||| |||||| |||| ||| || |||||||||||||||||| ||| ||||| |
|
|
| T |
4531649 |
atgaataataaaataaaatagaggggtgttggcgtataaatgagtcacgtgtaagggttggattaatgaagagataaggtggtgatataaacggttgata |
4531748 |
T |
|
| Q |
157 |
aagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaat |
230 |
Q |
| |
|
|||||||||||| ||| ||| |||| | | || ||||| ||||| | | |||||||||||||||||| |||| |
|
|
| T |
4531749 |
gagagtaatgatgaggaatcc-ataa-tgtgacgaagagtgatgacaattgatattatatatatgtaaataaat |
4531820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 24786425 - 24786268
Alignment:
| Q |
5 |
ataaagtatatagaaggccttgaatagatgagagaatagagtacgtctgtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcac |
104 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||| | |||||| |||||| |
|
|
| T |
24786425 |
ataaagtatatagattgcctagaatagatgagagaatagagcacgtctgtgagatgaataataaaataaaataaagggatgttgacgtagaataagtcac |
24786326 |
T |
|
| Q |
105 |
gcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgataaagagt |
162 |
Q |
| |
|
|||||||| | || ||| || | || |||||| ||||||| || |||||| ||||| |
|
|
| T |
24786325 |
acgtaaggtatagattaatgaaaagagaaggtgaagatataaacgaatgatagagagt |
24786268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 273
Target Start/End: Original strand, 44586360 - 44586574
Alignment:
| Q |
58 |
atgaatactaaaataaaataaatggatgttagcatagaa-tgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgata |
156 |
Q |
| |
|
||||||| | |||||||||| | ||||||| ||||||| ||||||| |||||||| |||| ||| | |||||||||||||||||| ||| ||||| |
|
|
| T |
44586360 |
atgaataatgaaataaaatagagggatgttgacatagaaatgagtcatgcgtaagggttggattaataaagagataaggtggtgatataaacggttgata |
44586459 |
T |
|
| Q |
157 |
aagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttg |
256 |
Q |
| |
|
|||||||||||| ||| ||| ||| || ||||| ||||| ||||||| || ||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
44586460 |
gagagtaatgatgaggaatcc-ata-ctgtaacaaagagtgatgacgattagtattatatatatgtaaagaaattactacgatatgaaatgatgatgtta |
44586557 |
T |
|
| Q |
257 |
tattataataatgatga |
273 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
44586558 |
aattataataataatga |
44586574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 16862432 - 16862347
Alignment:
| Q |
135 |
gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatat |
220 |
Q |
| |
|
||||| |||||| ||| ||||||||| |||||||| ||| ||||||||||| |||| || || || || ||||||||||||||| |
|
|
| T |
16862432 |
gtggtaatataaacggttgataaagactaatgatgaggaatcctataactacaacaaagggtgtcgatgattaatattatatatat |
16862347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1001 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold1001
Description:
Target: scaffold1001; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 129 - 286
Target Start/End: Complemental strand, 1545 - 1389
Alignment:
| Q |
129 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
228 |
Q |
| |
|
||||| ||| ||| ||| |||||||||| |||||| | ||| ||||||||||||| | | ||||||| ||||| | ||||||| ||||| || ||| || |
|
|
| T |
1545 |
gataatgtgatgacatatgcggatgatatagagtatttatgaggagtcctataaccgtgaaagagagtgatgactattaatatt-tatatgtggaaataa |
1447 |
T |
|
| Q |
229 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc |
286 |
Q |
| |
|
||||| || |||| |||||||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
1446 |
attacaacaatggaaaatgatgaggttatattataataatgatgagaatgacgatgtc |
1389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 1567041 - 1567154
Alignment:
| Q |
135 |
gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattact |
234 |
Q |
| |
|
|||||||||||| ||| |||| || ||||| ||| ||| || ||||| | | ||| ||||| ||||||| | |||||||||||||||||| |||| | | |
|
|
| T |
1567041 |
gtggtgatataaacggtggatagagggtaataatgaggaatcatataattgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaat |
1567140 |
T |
|
| Q |
235 |
acgatgggaaatga |
248 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
1567141 |
acgatgagaaatga |
1567154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 4547 - 4619
Alignment:
| Q |
5 |
ataaagtatatagaaggccttgaatagatgagagaatagagtacgtctgtgagatgaatactaaaataaaata |
77 |
Q |
| |
|
|||||||||||| | ||| |||||||||||||||||| || |||||||||||| ||| |||||||||||| |
|
|
| T |
4547 |
ataaagtatatatagatcctagaatagatgagagaataggatatgtctgtgagatggataataaaataaaata |
4619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 13972 - 14023
Alignment:
| Q |
26 |
gaatagatgagagaatagagtacgtctgtgagatgaatactaaaataaaata |
77 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||| ||| |||||||||||| |
|
|
| T |
13972 |
gaatagatgagaaaatagagtatgtctgtgagatagataataaaataaaata |
14023 |
T |
|
Back To:
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Target: scaffold0385 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0385
Description:
Target: scaffold0385; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 14485 - 14412
Alignment:
| Q |
6 |
taaagtatatagaaggccttgaatagatgagagaatagagtacgtctgtgagatgaatactaaaataaaataaa |
79 |
Q |
| |
|
||||||||||||| |||| |||||||||| | |||||||| |||||| |||| || | |||||||||||||| |
|
|
| T |
14485 |
taaagtatatagagagcctggaatagatgatgggatagagtatgtctgtaagatcaagaataaaataaaataaa |
14412 |
T |
|
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