View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13498_high_42 (Length: 302)
Name: NF13498_high_42
Description: NF13498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13498_high_42 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 42063034 - 42062752
Alignment:
| Q |
1 |
aatgagtttgtgtaatggatcacataactagtactgattctccatatctcagtgatagttgacactggagagggatctttgcagcaataagaggataaag |
100 |
Q |
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| T |
42063034 |
aatgagtttgtgtaatggatcacataactagtactgattctccatatctcagtgatagttgacactggagagggatctttgtagcaataagaggataaag |
42062935 |
T |
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| Q |
101 |
tgaagaaagagtgcaatgcgaagttcttttggttcaaagtctaaaatttcccttgataggtttcccattaatgtgaagtaactcaccctccccctcatcc |
200 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
42062934 |
tgaagaaagagtgcaaggcaaagttcttttggttcaaagtctaaaatttcccttgataggtttcccattattgtgaagcaactcaccctccccctcatct |
42062835 |
T |
|
| Q |
201 |
ttcgtattcatttcagttgggatgcttccagcggaaggctgagttacgttcattacttagctgatcagattggtatgatgatg |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42062834 |
ttcgtattcatttcagttgggatgcttccagcggaaggctgagttacgttcattacttagctgatcagattggtatgatgatg |
42062752 |
T |
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