View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13498_low_1 (Length: 475)

Name: NF13498_low_1
Description: NF13498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13498_low_1
NF13498_low_1
[»] chr4 (5 HSPs)
chr4 (31-89)||(4843420-4843478)
chr4 (288-354)||(5155429-5155495)
chr4 (31-68)||(5172102-5172139)
chr4 (1-31)||(5159213-5159243)
chr4 (1-34)||(4843345-4843378)


Alignment Details
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 4843420 - 4843478
Alignment:
Q  31 tgcaaagagtattatgtggagagtggcaaaacatattttttcaaagaaagagataagtc 89  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4843420 tgcaaagagtattatgtggagagtggcaaaccatattttttcaaagaaagagataagtc 4843478  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 5155495 - 5155429
Alignment:
Q  288 gggaaacctacgagaaaggtgaaactgaagttcacgaaagcaaaattagggagcataaccctattct 354  Q
    |||||| | ||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  5155495 gggaaaaccacgaggaaggtgaaattgaagttcaagaaagcaaaattagggagcataaccctattct 5155429  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 5172139 - 5172102
Alignment:
Q  31 tgcaaagagtattatgtggagagtggcaaaacatattt 68  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5172139 tgcaaagagtattatgtggagagtggcaaaacatattt 5172102  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 5159243 - 5159213
Alignment:
Q  1 acaaaatcgataaccatctttggatgagaat 31  Q
    |||||||||||||||||||||||||||||||    
T  5159243 acaaaatcgataaccatctttggatgagaat 5159213  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 4843345 - 4843378
Alignment:
Q  1 acaaaatcgataaccatctttggatgagaatgca 34  Q
    ||||||||||||||||||||||||||| ||||||    
T  4843345 acaaaatcgataaccatctttggatgaaaatgca 4843378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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