View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13499_low_1 (Length: 546)
Name: NF13499_low_1
Description: NF13499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13499_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 11 - 424
Target Start/End: Original strand, 24480922 - 24481335
Alignment:
| Q |
11 |
acatcatcaagattagcaacaacaaatacgaaactatatatcagtatatgaaatttgataaaacagattaaaatacgcttctgaaataacacttatacaa |
110 |
Q |
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| T |
24480922 |
acatcatcaagattagcaacaacaaatacgaaactatatatcagtatatgaaatttgataaaacagattaaaatacgcttctgaaataacacttatacaa |
24481021 |
T |
|
| Q |
111 |
aatgatacaacatggagtccaaagcatagctttattacagagcagacttttattactaatgaaaactttattgcaatacaaacaacacaacaatgatcat |
210 |
Q |
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| T |
24481022 |
aatgatacaacatggagtccaaagcatagctttattacagagcagacttttattactaatgaaaactttattgcaatacaaacaacacaacaatgatcat |
24481121 |
T |
|
| Q |
211 |
agtataactattggaaggagtcaaaatgcatatgtcatcaagcttaatacacagggggtggaggtgaactatattggtagggcttatatggtgtaggtgg |
310 |
Q |
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| T |
24481122 |
agtataactattggaaggagtcaaaatgcatatgtcatcaagcttaatacacagggggtggaggtgaactatattggtagggcttatatggtgtaggtgg |
24481221 |
T |
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| Q |
311 |
ggatttgtaaacgtaaggaggagatttataaacatagggagcgggtggtggggatttatagatatatggtggagactcataaacatatggagggggtata |
410 |
Q |
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| T |
24481222 |
ggatttgtaaacgtaaggaggagatttataaacatagggagcgggtggtggggatttatagatatatggtggagactcataaacatatggagggggtata |
24481321 |
T |
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| Q |
411 |
ggtttgtagtagta |
424 |
Q |
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| T |
24481322 |
ggtttgtagtagta |
24481335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 525
Target Start/End: Original strand, 24481402 - 24481436
Alignment:
| Q |
491 |
tttgtagacatattgtggaggaggaggtgattcgt |
525 |
Q |
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| T |
24481402 |
tttgtagacatattgtggaggaggaggtgattcgt |
24481436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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