View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13499_low_2 (Length: 505)
Name: NF13499_low_2
Description: NF13499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13499_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 11 - 482
Target Start/End: Original strand, 24480922 - 24481393
Alignment:
| Q |
11 |
acatcatcaagattagcaacaacaaatacgaaactatatatcagtatatgaaatttgataaaacagattaaaatacgcttctgaaataacacttatacaa |
110 |
Q |
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| T |
24480922 |
acatcatcaagattagcaacaacaaatacgaaactatatatcagtatatgaaatttgataaaacagattaaaatacgcttctgaaataacacttatacaa |
24481021 |
T |
|
| Q |
111 |
aatgatacaacatggagtccaaagcatagctttattacagagcagacttttattactaatgaaaactttattgcaatacaaacaacacaacaatgatcat |
210 |
Q |
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| T |
24481022 |
aatgatacaacatggagtccaaagcatagctttattacagagcagacttttattactaatgaaaactttattgcaatacaaacaacacaacaatgatcat |
24481121 |
T |
|
| Q |
211 |
agtataactattggaaggagtcaaaatgcatatgtcatcaagcttaatacacagggggtggaggtgaactatattggtagggcttatatggtgtaggtgg |
310 |
Q |
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| T |
24481122 |
agtataactattggaaggagtcaaaatgcatatgtcatcaagcttaatacacagggggtggaggtgaactatattggtagggcttatatggtgtaggtgg |
24481221 |
T |
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| Q |
311 |
ggatttgtaaacgtaaggaggagatttataaacatagggagcgggtggtggggatttatagatatatggtggagactcataaacatatggagggggtata |
410 |
Q |
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| T |
24481222 |
ggatttgtaaacgtaaggaggagatttataaacatagggagcgggtggtggggatttatagatatatggtggagactcataaacatatggagggggtata |
24481321 |
T |
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| Q |
411 |
ggtttgtagtagtatggaggaggtggtgatggtgagggtggaggaggtgactcataaacataaggtggtggt |
482 |
Q |
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| T |
24481322 |
ggtttgtagtagtatggaggaggtggtgatggtgagggtggaggaggtgactcataaacataaggtggtggt |
24481393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 413 - 478
Target Start/End: Original strand, 24420456 - 24420521
Alignment:
| Q |
413 |
tttgtagtagtatggaggaggtggtgatggtgagggtggaggaggtgactcataaacataaggtgg |
478 |
Q |
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| T |
24420456 |
tttgtagtagtatggaggaggtggtgaagctgaaggaggtggaggtgacttatagacatagggtgg |
24420521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 482
Target Start/End: Original strand, 24477659 - 24477718
Alignment:
| Q |
423 |
tatggaggaggtggtgatggtgagggtggaggaggtgactcataaacataaggtggtggt |
482 |
Q |
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| T |
24477659 |
tatggaggaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggt |
24477718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 24471170 - 24471121
Alignment:
| Q |
413 |
tttgtagtagtatggaggaggtggtgatggtgagggtggaggaggtgact |
462 |
Q |
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| T |
24471170 |
tttgtagtagtatggaggaggtggtgaagctgaaggaggtggaggtgact |
24471121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 460
Target Start/End: Complemental strand, 11882545 - 11882498
Alignment:
| Q |
413 |
tttgtagtagtatggaggaggtggtgatggtgagggtggaggaggtga |
460 |
Q |
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| T |
11882545 |
tttgtagtagtatggaggtggtggtgatggggatggtggtggaggtga |
11882498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 460
Target Start/End: Complemental strand, 11891779 - 11891732
Alignment:
| Q |
413 |
tttgtagtagtatggaggaggtggtgatggtgagggtggaggaggtga |
460 |
Q |
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| T |
11891779 |
tttgtagtagtatggaggtggtggtgatggggatggtggtggaggtga |
11891732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 482
Target Start/End: Complemental strand, 11879590 - 11879522
Alignment:
| Q |
414 |
ttgtagtagtatggaggaggtggtgatggtgagggtggaggaggtgactcataaacataaggtggtggt |
482 |
Q |
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|||||||||||||| || ||||| || ||||||||||| || ||||||| || |||||||| |||||| |
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| T |
11879590 |
ttgtagtagtatggtggtggtggggaaggtgagggtggtggtggtgacttgtacacataaggaggtggt |
11879522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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