View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13499_low_3 (Length: 292)

Name: NF13499_low_3
Description: NF13499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13499_low_3
NF13499_low_3
[»] chr2 (3 HSPs)
chr2 (58-271)||(35411657-35411876)
chr2 (218-276)||(16625730-16625788)
chr2 (219-276)||(16519016-16519073)
[»] chr7 (2 HSPs)
chr7 (59-99)||(48992218-48992258)
chr7 (218-276)||(42112885-42112943)
[»] chr8 (2 HSPs)
chr8 (218-276)||(1840133-1840191)
chr8 (218-276)||(39194028-39194086)
[»] chr5 (1 HSPs)
chr5 (218-276)||(6044630-6044688)
[»] chr4 (2 HSPs)
chr4 (218-276)||(35959278-35959336)
chr4 (235-276)||(16006272-16006313)
[»] chr3 (1 HSPs)
chr3 (218-276)||(18257634-18257692)
[»] chr1 (1 HSPs)
chr1 (218-276)||(5970367-5970425)
[»] chr6 (1 HSPs)
chr6 (220-276)||(26713950-26714006)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 7e-58; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 58 - 271
Target Start/End: Original strand, 35411657 - 35411876
Alignment:
Q  58 caccccaagtaacgaaaacgacggtgtagtaagtgaggataa---tagctgcaaacaaggctttgtttgggagtttggagcaagaaaaatggagagcttt 154  Q
    |||||||||||| |||||| ||||||||||||||||||||||   ||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||    
T  35411657 caccccaagtaaggaaaacaacggtgtagtaagtgaggataagaatagctgcgaaccaggctttgtttgggagtttggagcaaggaaaatggagagcttt 35411756  T
Q  155 gggggtgagaaatatagaggaaaatg-nnnnnnnctttcacatatttttgaaggta--nnnnnnnnagagaatgaaaaaccaatgcttataattcatatg 251  Q
    ||||||||||||||||||||||||||        ||||||||||||||||||||||          |||||||||||||| |||||||||||||||||||    
T  35411757 gggggtgagaaatatagaggaaaatgaaaaaaaactttcacatatttttgaaggtattttttttttagagaatgaaaaactaatgcttataattcatatg 35411856  T
Q  252 ttttaactattaagaatatt 271  Q
    |||| |||||||||||||||    
T  35411857 tttttactattaagaatatt 35411876  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 16625730 - 16625788
Alignment:
Q  218 agagaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataac 276  Q
    ||||||||| |||||||||||||| |||||||| |||| | ||||||||||||||||||    
T  16625730 agagaatgataaaccaatgcttatgattcatatatttttaatattaagaatattataac 16625788  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 16519016 - 16519073
Alignment:
Q  219 gagaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataac 276  Q
    |||||| | |||| ||||||||| |||||||| |||| | ||||||||||||||||||    
T  16519016 gagaatcataaactaatgcttatgattcatatatttttaatattaagaatattataac 16519073  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 48992258 - 48992218
Alignment:
Q  59 accccaagtaacgaaaacgacggtgtagtaagtgaggataa 99  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  48992258 accccaagtaacgaaaacgacggcgtagtaagttaggataa 48992218  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 42112885 - 42112943
Alignment:
Q  218 agagaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataac 276  Q
    ||||||||| |||| ||||||||| |||||||| |||| | ||||||||||||| ||||    
T  42112885 agagaatgataaactaatgcttatgattcatatatttttaatattaagaatattttaac 42112943  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 1840133 - 1840191
Alignment:
Q  218 agagaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataac 276  Q
    ||||||||| |||||||||||||| |||||||| | || | ||||||||||| ||||||    
T  1840133 agagaatgataaaccaatgcttatgattcatatatatttaatattaagaatactataac 1840191  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 39194086 - 39194028
Alignment:
Q  218 agagaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataac 276  Q
    ||||||||| |||| |||| |||| |||||||| |||| | ||||||||||||||||||    
T  39194086 agagaatgataaactaatgtttatgattcatatatttttaatattaagaatattataac 39194028  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 6044688 - 6044630
Alignment:
Q  218 agagaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataac 276  Q
    ||||||||| |||| ||| ||||| |||||||| |||| | ||||||||||||||||||    
T  6044688 agagaatgataaactaatacttatcattcatatatttttaatattaagaatattataac 6044630  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 35959336 - 35959278
Alignment:
Q  218 agagaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataac 276  Q
    ||||||||| |||  ||||||||| |||||||| |||| | ||||||||||||||||||    
T  35959336 agagaatgataaagtaatgcttatgattcatatatttttaatattaagaatattataac 35959278  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 16006272 - 16006313
Alignment:
Q  235 tgcttataattcatatgttttaactattaagaatattataac 276  Q
    |||||||||||||||| |||| | ||||||||||||||||||    
T  16006272 tgcttataattcatatatttttaatattaagaatattataac 16006313  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 18257634 - 18257692
Alignment:
Q  218 agagaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataac 276  Q
    ||||||||| |||| |||| |||| |||||||| |||| | ||||||||||||||||||    
T  18257634 agagaatgataaactaatgtttatgattcatatatttttaatattaagaatattataac 18257692  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 5970367 - 5970425
Alignment:
Q  218 agagaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataac 276  Q
    ||||||||| |||| |||| |||| ||| ||||||||| | ||||||||||||||||||    
T  5970367 agagaatgataaactaatgtttatgattgatatgtttttaatattaagaatattataac 5970425  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 26714006 - 26713950
Alignment:
Q  220 agaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataac 276  Q
    ||||||| |||| ||||||||| |||||||| |||| | ||||||||||| ||||||    
T  26714006 agaatgataaactaatgcttatgattcatatatttttaatattaagaataatataac 26713950  T

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