View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350-INSERTION-2 (Length: 626)
Name: NF1350-INSERTION-2
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350-INSERTION-2 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 14193164 - 14192871
Alignment:
| Q |
10 |
aaacttatattaaagtcgaatgtatccgtcaaatcaattacctccggannnnnnngcacctggc---gtactggaatgatgattatcccagcagctagaa |
106 |
Q |
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| T |
14193164 |
aaacgtatattaaagtcgaatgtatccgtcaaatcaagtacctggggatttcgttccaccaggcagggtactggaatgatgattatcccagcagctagaa |
14193065 |
T |
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| Q |
107 |
gcttagtagcgcatcgaactagctcttgccttgctggctttgcatctctaatccggctgtctgtcacagtagaaaagtgcataaaatcaagtatatgagc |
206 |
Q |
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| T |
14193064 |
gactagtagcgcatcgaactagctcttgccttgctggctttgcatctctaatccggctgtcttccacagtagaaaagtgcattaaatcaagtatatgagc |
14192965 |
T |
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| Q |
207 |
acagcccctggtattttgtaaagggtaaccgaatgccctctgcacaattctagcaacccgatgatcgttccagacctccacatattgagcaacc |
300 |
Q |
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| T |
14192964 |
acagcccctggtattctgaagagggtaaccgaatgccctctgcacaattctagcaacccgatgatcgttccaaacctgcacatgttgagcaacc |
14192871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 386 - 622
Target Start/End: Complemental strand, 14192743 - 14192507
Alignment:
| Q |
386 |
caaccgggtgatcgacctcgggtacaaaattttcgcccaaggttttcctgtataacttcttgagaacaatgaagggtatttggttctcaagcaatgtgat |
485 |
Q |
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| T |
14192743 |
caaccgggttatcgtgctcgggtacaaatctttcgccgatggttttcctgtataacttcttgagaacaatgaagggtatttggttctcaagcaatgtgat |
14192644 |
T |
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| Q |
486 |
gtcgttcacagcagcacacatcttttccctggtttcaaatattgggtcttcggcatctattgctggctgattaagtttactgagaaactgtaacagaaaa |
585 |
Q |
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| T |
14192643 |
gtcgttcacagcagcacacatcttttccctggtttcaaatattgggtcttggggatctattgttgggtgttcaagtctactgagaagctgtaacagaaaa |
14192544 |
T |
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| Q |
586 |
caaccatccaatatcattgttatcccgataacgtctg |
622 |
Q |
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| T |
14192543 |
caaccatccaatatcatttttctcccgataacatctg |
14192507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 430 - 491
Target Start/End: Complemental strand, 18521560 - 18521499
Alignment:
| Q |
430 |
ttcctgtataacttcttgagaacaatgaagggtatttggttctcaagcaatgtgatgtcgtt |
491 |
Q |
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| T |
18521560 |
ttcctatacaacttcttgagaacaatgaagggtatttggttctcaagcattgtgatatcgtt |
18521499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 478
Target Start/End: Complemental strand, 4591058 - 4591021
Alignment:
| Q |
441 |
cttcttgagaacaatgaagggtatttggttctcaagca |
478 |
Q |
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| T |
4591058 |
cttcttgagaataatgaagggaatttggttctcaagca |
4591021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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