View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1350-INSERTION-3 (Length: 644)
Name: NF1350-INSERTION-3
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350-INSERTION-3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 87 - 414
Target Start/End: Original strand, 17744440 - 17744767
Alignment:
| Q |
87 |
tgctttcattttgtgtgcgagatatgttggatcaataaatctcacaataaatccaattgtgaaaaacaaacttgaatgttttaccacttgtttcaaaact |
186 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17744440 |
tgctttcattttgtgtgcgacatatgttggatcaataaatctcacaataaatccaattgtgaaaaacaaacttgaatgttttaccacttgtttgaaaact |
17744539 |
T |
|
| Q |
187 |
ttaattagcacacacgaagaagtgactttagtattatgaatttatttttattttgaacatacaaacttgctactgtctacaaaaagcattattggtataa |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17744540 |
ctaattagcacacacgaagaagtgactttagtattatgaatttatttttattttgaaaatacaaacttgctactgtctagaaaaagcattattggtataa |
17744639 |
T |
|
| Q |
287 |
ccattttctgtgacatcaaacctttgactcattttgaatacctaatgtcttgctgccaattatctgtgtaggcttattttgcaactcagtttctcataac |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17744640 |
ccattttctgtgacatcaaacctttgactcattttgaatacctaatgtcttgctgccaattatctgtataggcttattttgcaactcagtttctcataac |
17744739 |
T |
|
| Q |
387 |
tgtctccaaatgtggtgtatggaacaga |
414 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
17744740 |
tgtctccaaatgtggtgtatggaacaga |
17744767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 374 - 644
Target Start/End: Original strand, 17735511 - 17735782
Alignment:
| Q |
374 |
agtttctcataactgtctccaaatgtggtgtatggaacagatttagcaacaaaatctgtgccaataatatcaacaaaatgtttaactcttttcttataat |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17735511 |
agtttctcataactgtctccaaatgtggtgtatggaacagatttagcaactaaatctgtgccaataatatcaacaaaatgtttaactcttctcttataat |
17735610 |
T |
|
| Q |
474 |
gctcgtgaaaaatttcagatgatttattttaacatgtttaactttacaattgatacttatttgaaggataatgaagttagagaagaagtgaatttctggg |
573 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||| ||| | ||||||| | | ||||||||||||| |||| |
|
|
| T |
17735611 |
gctcgtgaaaaaattcagatgatttattttaacatgtttaattttacaattgatactggtttgcaggctgatgaagtgataaaagaagtgaatttatggg |
17735710 |
T |
|
| Q |
574 |
ctgaaaaggagacaaaagggctta-taaaaatcttcttccagctggctcaattaacagcttaacccgcctca |
644 |
Q |
| |
|
|| | ||||||||||| ||| ||| ||| ||||||||||| || ||| || ||||||||||| |||||| |
|
|
| T |
17735711 |
ctaataaggagacaaaggggtttattaatgatcttcttccacgcgggtcagttgacagcttaaccagcctca |
17735782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 355 - 644
Target Start/End: Original strand, 16721723 - 16722005
Alignment:
| Q |
355 |
taggcttattttgcaactcagtttctcataactgtctccaaatgtggtgtatggaacagatttagcaacaaaatctgtgccaataatatcaacaaaatgt |
454 |
Q |
| |
|
||||||||||||||||||| ||||| | | ||| |||||| ||||||||||||||| ||||||||||| |||| || |||||||||||||||| |
|
|
| T |
16721723 |
taggcttattttgcaactctgtttcacctgactctctccatatgtggtgtatggaa--------gcaacaaaatcagtgcgaaaaatatcaacaaaatgt |
16721814 |
T |
|
| Q |
455 |
ttaactcttttcttataatgctcgtgaaaaatttcagatgatttattttaacatgtttaactttacaattgatacttatttgaaggataatgaagttaga |
554 |
Q |
| |
|
|| | |||| | ||||||||||| ||||||| |||| |||||||||||||||||| |||| ||||||||||||||| |||||||| |||||||||| || |
|
|
| T |
16721815 |
tttattcttgtgttataatgctcatgaaaaaattcaaatgatttattttaacatggttaattttacaattgatactgttttgaaggctaatgaagttgga |
16721914 |
T |
|
| Q |
555 |
gaagaagtgaatttctgggctgaaaaggagacaaaagggctta-taaaaatcttcttccagctggctcaattaacagcttaacccgcctca |
644 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
16721915 |
gaagaagtgaatttctgggctgaaaaggagacaaaagggcttattaaaaatcttcttccacctggctcagttaacagcttaacccgcctca |
16722005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 355 - 644
Target Start/End: Original strand, 17698737 - 17699019
Alignment:
| Q |
355 |
taggcttattttgcaactcagtttctcataactgtctccaaatgtggtgtatggaacagatttagcaacaaaatctgtgccaataatatcaacaaaatgt |
454 |
Q |
| |
|
||||||||||||||||||| ||||| | | ||| |||||| ||||||||||||||| ||||||||||| |||| || |||||||||||||||| |
|
|
| T |
17698737 |
taggcttattttgcaactctgtttcacctgactctctccatatgtggtgtatggaa--------gcaacaaaatcagtgcgaaaaatatcaacaaaatgt |
17698828 |
T |
|
| Q |
455 |
ttaactcttttcttataatgctcgtgaaaaatttcagatgatttattttaacatgtttaactttacaattgatacttatttgaaggataatgaagttaga |
554 |
Q |
| |
|
|| | |||| | ||||||||||| ||||||| |||| |||||||||||||||||| |||| ||||||||||||||| |||||||| |||||||||| || |
|
|
| T |
17698829 |
tttattcttgtgttataatgctcatgaaaaaattcaaatgatttattttaacatggttaattttacaattgatactgttttgaaggctaatgaagttgga |
17698928 |
T |
|
| Q |
555 |
gaagaagtgaatttctgggctgaaaaggagacaaaagggctta-taaaaatcttcttccagctggctcaattaacagcttaacccgcctca |
644 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
17698929 |
gaagaagtgaatttctgggctgaaaaggagacaaaagggcttattaaaaatcttcttccacctggctcagttaacagcttaacccgcctca |
17699019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 421 - 636
Target Start/End: Original strand, 17717728 - 17717944
Alignment:
| Q |
421 |
aacaaaatctgtgccaataatatcaacaaaatgtttaactcttttcttataatgctcgtgaaaaatttcagatgatttattttaacatgtttaactttac |
520 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| | | || | ||||||||||| ||||||| || | |||||||||||||||||| ||| ||||| |
|
|
| T |
17717728 |
aacaaaatatgtgccaataatatcaacaaaatgttttattattctgttataatgctcatgaaaaagttaaaatgatttattttaacatggataattttac |
17717827 |
T |
|
| Q |
521 |
aattgatacttatttgaaggataatgaagttagagaagaagtgaatttctgggctgaaaaggagacaaaagggctta-taaaaatcttcttccagctggc |
619 |
Q |
| |
|
|||||||||| ||||||||| | ||||||| ||| ||||||||||| | |||||||||||||||||||||||||||| |||||||||||||| | ||||| |
|
|
| T |
17717828 |
aattgatactgatttgaaggctgatgaagtgagaaaagaagtgaatgtatgggctgaaaaggagacaaaagggcttattaaaaatcttcttcaacctggc |
17717927 |
T |
|
| Q |
620 |
tcaattaacagcttaac |
636 |
Q |
| |
|
||| || |||||||||| |
|
|
| T |
17717928 |
tcagttcacagcttaac |
17717944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 445 - 642
Target Start/End: Original strand, 17744762 - 17744961
Alignment:
| Q |
445 |
aacaaaatgtttaactcttttcttataatgctcgtgaaaaatttcagatgatttattttaacatgtttaactttacaattgatacttatttgaaggataa |
544 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| | | |
|
|
| T |
17744762 |
aacagaatgtttaactcttttcttataatgctcgtgaaaaaattcagatgatttattttaacatgtttaattttacaattgatacttatttgaaggctga |
17744861 |
T |
|
| Q |
545 |
tg-aagttagagaagaagtgaatttctgggctgaaaaggagacaaaagggctta-taaaaatcttcttccagctggctcaattaacagcttaacccgcct |
642 |
Q |
| |
|
|| |||| ||| || |||||||||| |||||||||||| ||||||||||||||| | || ||||||||||| || ||| |||||||||||||| |||| |
|
|
| T |
17744862 |
tgaaagtgagaaaacaagtgaatttatgggctgaaaagaagacaaaagggcttattcaagatcttcttccacacggatcagttaacagcttaaccagcct |
17744961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 421 - 613
Target Start/End: Original strand, 17707917 - 17708097
Alignment:
| Q |
421 |
aacaaaatctgtgccaataatatcaacaaaatgtttaactcttttcttataatgctcgtgaaaaatttcagatgatttattttaacatgtttaactttac |
520 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| | | || | ||||||||||| | ||||| |||| ||||||||||||||||| |
|
|
| T |
17707917 |
aacaaaatatgtgccaataatatcaacaaaatgttttattattctgttataatgctcataaaaaaattcaaatgatttattttaacat------------ |
17708004 |
T |
|
| Q |
521 |
aattgatacttatttgaaggataatgaagttagagaagaagtgaatttctgggctgaaaaggagacaaaagggctta-taaaaatcttcttcca |
613 |
Q |
| |
|
||||||||| ||||||||| | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17708005 |
-attgatactgatttgaaggctgatgaagtgagagaagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttcca |
17708097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 158 - 258
Target Start/End: Original strand, 17735284 - 17735383
Alignment:
| Q |
158 |
ttgaatgttttaccacttgtttcaaaactttaattagcacacacgaagaagtgactttagtattatgaattta-tttttattttgaacatacaaacttgc |
256 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| || |
|
|
| T |
17735284 |
ttgaatgttttaccacttgtttgaaaactgtaattagcaca--cgaagaagtgactttagtattatgaatttattttttattttgatcatacaaactagc |
17735381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 17744288 - 17744350
Alignment:
| Q |
7 |
aatgagaggttagaccctctttctcaattgcgtgattcattggcctaaaatatcaatcttcattcttg |
74 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
17744288 |
aatgagaggttagaccctctttctcacttgc----ttcattggcct-aaatatcaatcttcattcttg |
17744350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 602
Target Start/End: Original strand, 46544223 - 46544269
Alignment:
| Q |
556 |
aagaagtgaatttctgggctgaaaaggagacaaaagggcttataaaa |
602 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| || ||||||||| |
|
|
| T |
46544223 |
aagaagtgaatttatgggctgaaaaagagacaaatggtcttataaaa |
46544269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University