View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350-INSERTION-31 (Length: 363)
Name: NF1350-INSERTION-31
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350-INSERTION-31 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 53834568 - 53834348
Alignment:
| Q |
7 |
actaatgaattatattnnnnnnngtgcatttgtagttttatttataaacatagattttcattctttgatacaataatatacaaactcctaatcagaacaa |
106 |
Q |
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| T |
53834568 |
actaatgaattatattaaaaaaagtgcatttgtaattttatttataaacatagattttcattctttgatacaataatatacaaactcctaatcagaacaa |
53834469 |
T |
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| Q |
107 |
tatccacacagaaaatatattgnnnnnnnnggaagaaatatatacgaaaatataccccttagtataagataattttgttcaacatcaacatgtcaataat |
206 |
Q |
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| T |
53834468 |
tatccacacagaaaatgtattgttttttttggaagaaatatatacgaaaatatacctcttagtataagataattttgttcaacaccaacatgtcaataat |
53834369 |
T |
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| Q |
207 |
tgtagaacctttctcttaaag |
227 |
Q |
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| T |
53834368 |
tgtagaacctttctcttaaag |
53834348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 249 - 334
Target Start/End: Complemental strand, 53834323 - 53834238
Alignment:
| Q |
249 |
acaagatatcaatccagaaacctctcactctaactaagcttattattatttttaactaagatctcactaagaaatgtttttgcata |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
53834323 |
acaagatatcaatccagaaacctctcactctaactaagcttattattatgtttaattaagatctcactaagaaatgtttttgcata |
53834238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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