View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1350-INSERTION-32 (Length: 682)

Name: NF1350-INSERTION-32
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1350-INSERTION-32
NF1350-INSERTION-32
[»] chr2 (16 HSPs)
chr2 (334-682)||(30503103-30503453)
chr2 (8-222)||(30503565-30503779)
chr2 (522-585)||(42740970-42741033)
chr2 (521-578)||(42982544-42982601)
chr2 (452-639)||(16518718-16518906)
chr2 (521-600)||(2002723-2002802)
chr2 (493-580)||(33019156-33019243)
chr2 (529-580)||(43501123-43501174)
chr2 (447-557)||(33502258-33502367)
chr2 (472-580)||(13912785-13912895)
chr2 (427-488)||(7632526-7632587)
chr2 (493-606)||(22535970-22536083)
chr2 (334-367)||(30502622-30502655)
chr2 (428-488)||(4894090-4894150)
chr2 (525-557)||(8481299-8481331)
chr2 (544-580)||(21234576-21234612)
[»] chr6 (24 HSPs)
chr6 (450-682)||(5724585-5724821)
chr6 (527-639)||(4910847-4910959)
chr6 (427-558)||(34910967-34911095)
chr6 (427-637)||(434168-434381)
chr6 (437-644)||(765327-765537)
chr6 (532-593)||(7952748-7952809)
chr6 (521-594)||(30927027-30927100)
chr6 (541-585)||(16540100-16540144)
chr6 (436-639)||(26280544-26280748)
chr6 (522-641)||(2234452-2234571)
chr6 (392-470)||(34026382-34026460)
chr6 (427-593)||(34620871-34621039)
chr6 (427-593)||(34748308-34748476)
chr6 (522-593)||(852517-852588)
chr6 (521-580)||(6654118-6654177)
chr6 (527-580)||(6895984-6896037)
chr6 (467-580)||(957595-957710)
chr6 (547-635)||(35098228-35098315)
chr6 (513-580)||(8860502-8860569)
chr6 (522-580)||(1485175-1485233)
chr6 (493-555)||(17225875-17225937)
chr6 (493-676)||(25195366-25195549)
chr6 (386-488)||(28466875-28466977)
chr6 (386-488)||(34736756-34736858)
[»] chr8 (22 HSPs)
chr8 (437-637)||(32927833-32928035)
chr8 (520-600)||(44141077-44141157)
chr8 (521-600)||(4662931-4663010)
chr8 (493-585)||(13384654-13384746)
chr8 (437-580)||(26100088-26100233)
chr8 (521-578)||(35494990-35495047)
chr8 (493-582)||(38868494-38868583)
chr8 (523-603)||(10367970-10368050)
chr8 (493-580)||(15677815-15677903)
chr8 (527-646)||(37684337-37684456)
chr8 (437-580)||(32994182-32994329)
chr8 (436-600)||(16972005-16972171)
chr8 (395-583)||(32767382-32767572)
chr8 (492-580)||(18355849-18355935)
chr8 (523-582)||(30098906-30098965)
chr8 (452-580)||(38335818-38335948)
chr8 (543-595)||(1836262-1836315)
chr8 (527-580)||(7244635-7244688)
chr8 (521-614)||(11574272-11574365)
chr8 (529-638)||(26668492-26668601)
chr8 (395-440)||(33733153-33733198)
chr8 (520-585)||(36200159-36200224)
[»] chr7 (17 HSPs)
chr7 (437-638)||(40491518-40491721)
chr7 (398-580)||(45557363-45557547)
chr7 (496-633)||(41386818-41386955)
chr7 (522-585)||(30182325-30182388)
chr7 (426-580)||(38123597-38123753)
chr7 (400-488)||(33853389-33853477)
chr7 (437-595)||(42344632-42344792)
chr7 (543-595)||(15903580-15903632)
chr7 (540-580)||(17111855-17111895)
chr7 (546-638)||(26984533-26984625)
chr7 (529-585)||(28725088-28725144)
chr7 (522-593)||(5489875-5489946)
chr7 (577-639)||(24953715-24953776)
chr7 (522-580)||(27571860-27571918)
chr7 (427-505)||(17111918-17111998)
chr7 (398-447)||(40491725-40491774)
chr7 (527-583)||(22195859-22195915)
[»] chr5 (15 HSPs)
chr5 (526-598)||(9818714-9818786)
chr5 (521-585)||(38845436-38845500)
chr5 (513-580)||(6951325-6951392)
chr5 (513-595)||(14299313-14299395)
chr5 (479-580)||(18851066-18851169)
chr5 (427-580)||(18637282-18637436)
chr5 (437-600)||(36639915-36640081)
chr5 (395-488)||(36927587-36927680)
chr5 (394-450)||(9818864-9818920)
chr5 (516-582)||(11648078-11648144)
chr5 (521-579)||(22226264-22226322)
chr5 (523-595)||(3970430-3970503)
chr5 (526-595)||(13171794-13171863)
chr5 (511-580)||(39097244-39097313)
chr5 (495-559)||(28110440-28110504)
[»] chr4 (27 HSPs)
chr4 (417-580)||(8604541-8604709)
chr4 (521-676)||(35064963-35065120)
chr4 (520-600)||(50061655-50061735)
chr4 (521-600)||(32818398-32818477)
chr4 (496-613)||(26617433-26617550)
chr4 (525-608)||(49138795-49138877)
chr4 (521-595)||(9134593-9134667)
chr4 (466-673)||(46344805-46345013)
chr4 (527-642)||(2635099-2635214)
chr4 (521-580)||(30357510-30357569)
chr4 (522-580)||(9064229-9064287)
chr4 (543-595)||(11271587-11271640)
chr4 (430-576)||(20712749-20712897)
chr4 (545-638)||(29779106-29779199)
chr4 (493-600)||(31012738-31012846)
chr4 (520-580)||(55186989-55187049)
chr4 (525-580)||(14596687-14596742)
chr4 (521-559)||(45011893-45011931)
chr4 (562-595)||(33843661-33843694)
chr4 (427-488)||(33843803-33843864)
chr4 (452-488)||(1023875-1023911)
chr4 (513-549)||(4905903-4905939)
chr4 (493-576)||(16551959-16552040)
chr4 (523-575)||(16643981-16644033)
chr4 (523-595)||(25927291-25927363)
chr4 (523-551)||(29729012-29729040)
chr4 (520-580)||(30357645-30357705)
[»] chr1 (29 HSPs)
chr1 (522-614)||(6021768-6021860)
chr1 (493-585)||(1514336-1514428)
chr1 (521-576)||(11049252-11049307)
chr1 (521-640)||(28083916-28084035)
chr1 (392-462)||(40662888-40662958)
chr1 (525-591)||(48549044-48549110)
chr1 (437-571)||(7524120-7524256)
chr1 (390-556)||(34915088-34915256)
chr1 (521-574)||(51500862-51500915)
chr1 (513-580)||(3016160-3016227)
chr1 (522-580)||(28287365-28287423)
chr1 (525-682)||(31362237-31362392)
chr1 (521-577)||(30557505-30557561)
chr1 (391-487)||(47978330-47978426)
chr1 (522-576)||(3515820-3515874)
chr1 (529-575)||(40663015-40663061)
chr1 (392-469)||(14644832-14644909)
chr1 (427-487)||(6932116-6932176)
chr1 (521-580)||(7790670-7790729)
chr1 (522-593)||(10324967-10325038)
chr1 (523-582)||(27849135-27849194)
chr1 (389-480)||(31362127-31362218)
chr1 (394-477)||(35682019-35682102)
chr1 (522-578)||(33693020-33693077)
chr1 (428-488)||(5868165-5868225)
chr1 (521-553)||(15084623-15084655)
chr1 (493-577)||(30850399-30850483)
chr1 (396-444)||(48507670-48507718)
chr1 (427-467)||(52013431-52013471)
[»] scaffold0168 (1 HSPs)
scaffold0168 (527-682)||(31720-31877)
[»] chr3 (18 HSPs)
chr3 (501-639)||(44771633-44771771)
chr3 (437-595)||(37334976-37335136)
chr3 (513-580)||(40147870-40147937)
chr3 (493-580)||(52364049-52364136)
chr3 (521-594)||(32523368-32523442)
chr3 (527-580)||(35058065-35058118)
chr3 (572-641)||(48410891-48410960)
chr3 (540-600)||(7717368-7717428)
chr3 (392-557)||(31708137-31708303)
chr3 (544-600)||(41115413-41115469)
chr3 (427-600)||(35058339-35058507)
chr3 (521-595)||(25359602-25359676)
chr3 (521-555)||(41596177-41596211)
chr3 (522-575)||(27266823-27266876)
chr3 (437-575)||(31013021-31013161)
chr3 (394-483)||(42484399-42484488)
chr3 (522-639)||(44958635-44958752)
chr3 (527-639)||(54596757-54596869)
[»] scaffold0361 (1 HSPs)
scaffold0361 (458-639)||(14077-14259)
[»] scaffold0005 (1 HSPs)
scaffold0005 (525-580)||(220636-220691)


Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 334 - 682
Target Start/End: Complemental strand, 30503453 - 30503103
Alignment:
Q  334 aaaatgtggctacttgattgttgtcatgttagattagctattatgggattcgcactacttagtgtatgtttggttatgcaatgacaagaatcaattttga 433  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| |||||||    
T  30503453 aaaatgtggctacttgattgttttcatgttagattagctattatgggattcacactaattagtgtatgtttggttatgcaatgacaataatcgattttga 30503354  T
Q  434 gtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggataatcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatca 533  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30503353 gtgaattgattctgactaaaagttagttgaaggtaaactgatttttgtttggataatcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatca 30503254  T
Q  534 attcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacattttagaatcaatt 633  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||    
T  30503253 attcttgaatcaaaagctacgaatcctggcttcaagtagaatcaattttggaggcaaaatcatttcttcttgaaatcaatcgaacatgttagaatcaatt 30503154  T
Q  634 ctacacttcc-aaatc-attttgaaccctttagaagtggaaccaagcatac 682  Q
    |||||||||| ||||| ||||||| ||||||||||||||||||||||||||    
T  30503153 ctacacttccaaaatcaattttgacccctttagaagtggaaccaagcatac 30503103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 30503779 - 30503565
Alignment:
Q  8 tatggacctagtatgctcccaaccctaaatatcgccggcgacgttgttttggtggagcatgtttctccgaggattgggaaagttggtcatggtgatttgg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30503779 tatggacctagtatgctcccaaccctaaatatcgccggcgacgttgttttggtggagcatgtttctccgaggattgggaaagttggtcatggtgatttgg 30503680  T
Q  108 ttcttgtgaagtcacctttgaaccctaataggaatttgacaaaaagggttgttgctatggaaggggatactgttacttattttgatcctttgaattctga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30503679 ttcttgtgaagtcacctttgaaccctaataggaatttgacaaaaagggttgttgctatggaaggggatactgttacttattttgatcctttgaattctga 30503580  T
Q  208 ggattccagaattgc 222  Q
    |||||||||||||||    
T  30503579 ggattccagaattgc 30503565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 522 - 585
Target Start/End: Complemental strand, 42741033 - 42740970
Alignment:
Q  522 gtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttgga 585  Q
    ||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||| ||||    
T  42741033 gtgtaaaaatcaattctagaatcaaaagctacaaatcttagcttcaagtagaatcaattatgga 42740970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 521 - 578
Target Start/End: Complemental strand, 42982601 - 42982544
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaa 578  Q
    |||||||||||||||||| |||||||||||||||| | || |||||||||||||||||    
T  42982601 tgtgtaaaaatcaattctggaatcaaaagctacaatttctagcttcaagtagaatcaa 42982544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 452 - 639
Target Start/End: Complemental strand, 16518906 - 16518718
Alignment:
Q  452 aaagttagttgaaggtaaactgatttttgtttggataa--tcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttg-aatcaaaa 548  Q
    ||||| |||||| |||||| |||||| ||||||||||   || ||||||| |||||| || | ||||||  || |||||| |||  ||||  ||||||||    
T  16518906 aaagtgagttgagggtaaaatgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgcgtaaaagtca--tcttataatcaaaa 16518809  T
Q  549 gctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacattttagaatcaattctacac 639  Q
    ||||||||||||  |||| ||||||||||||| ||||||||||| || ||| | |  ||| ||| | ||||| | ||||||||||||||||    
T  16518808 gctacaaatcctatcttctagtagaatcaattctggaagcaaaaccaattcatttgaaaagcaaccaaacatatcagaatcaattctacac 16518718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 521 - 600
Target Start/End: Original strand, 2002723 - 2002802
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttct 600  Q
    |||||||||||||||| | |||| |||| ||||||||||| ||||||||||||||||  | |||| ||||||||| ||||    
T  2002723 tgtgtaaaaatcaattttagaatgaaaaactacaaatcctagcttcaagtagaatcaggtctggaggcaaaatcaattct 2002802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 493 - 580
Target Start/End: Original strand, 33019156 - 33019243
Alignment:
Q  493 tgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    ||||||| |||||| || | |||||| |||||| ||||||||||||  || |||||||||||||| || ||||||| || ||||||||    
T  33019156 tgtaaaagtgagttgaactataaatttatgtgtgaaaatcaattctaaaaccaaaagctacaaattctagcttcaaatataatcaatt 33019243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 529 - 580
Target Start/End: Complemental strand, 43501174 - 43501123
Alignment:
Q  529 aatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    ||||||||||  |||||||||||||||||||| | |||||||||||||||||    
T  43501174 aatcaattctaaaatcaaaagctacaaatcctagtttcaagtagaatcaatt 43501123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 447 - 557
Target Start/End: Complemental strand, 33502367 - 33502258
Alignment:
Q  447 gactgaaagttagttgaaggtaaactgatttttgtttggata-atcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatca 545  Q
    |||| ||||| ||||||| ||||| |||||| |||||||||| ||  ||||||| |||||| || | |||||   |||||||||||||||| | ||||||    
T  33502367 gactaaaagtaagttgaatgtaaagtgatttgtgtttggatacat--tgtaaaagtgagttgaactataaatatgtgtgtaaaaatcaattttagaatca 33502270  T
Q  546 aaagctacaaat 557  Q
    |||| |||||||    
T  33502269 aaagttacaaat 33502258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 472 - 580
Target Start/End: Complemental strand, 13912895 - 13912785
Alignment:
Q  472 tgatttttgtttggata--atcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaag 569  Q
    |||||| ||||||||||  ||| |||||||||||||| ||   ||||||  ||||||||||| |||||| |||| ||||  ||||||| || |||||| |    
T  13912895 tgatttgtgtttggatacaatcatgtaaaaatgagttgaacggtaaatttgtgtgtaaaaattaattctagaataaaaaattacaaattctagcttcatg 13912796  T
Q  570 tagaatcaatt 580  Q
    |||||| ||||    
T  13912795 tagaataaatt 13912785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 488
Target Start/End: Original strand, 7632526 - 7632587
Alignment:
Q  427 attttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggata 488  Q
    |||||||||||||| ||||||| | ||||| | ||||||||||| |||| | ||||||||||    
T  7632526 attttgagtgaatttattctgattaaaagtgaattgaaggtaaagtgatatgtgtttggata 7632587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 606
Target Start/End: Complemental strand, 22536083 - 22535970
Alignment:
Q  493 tgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaa 592  Q
    |||||||||||||| || | |||||   |||| |||||| ||||||  ||||||||||| ||||| ||   ||||||||||||||||| |  | ||||||    
T  22536083 tgtaaaaatgagtttaactataaatatgtgtgcaaaaattaattctaaaatcaaaagcttcaaattctaaattcaagtagaatcaattctaaaggcaaaa 22535984  T
Q  593 tcatttcttcttga 606  Q
    ||| |||| |||||    
T  22535983 tcaattctacttga 22535970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 367
Target Start/End: Complemental strand, 30502655 - 30502622
Alignment:
Q  334 aaaatgtggctacttgattgttgtcatgttagat 367  Q
    |||||||||||||||||||||||||||| |||||    
T  30502655 aaaatgtggctacttgattgttgtcatgctagat 30502622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 428 - 488
Target Start/End: Original strand, 4894090 - 4894150
Alignment:
Q  428 ttttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggata 488  Q
    |||||||||||||||||||  || ||| | ||||||||||||| |||||| ||||| ||||    
T  4894090 ttttgagtgaattgattctagctaaaattaagttgaaggtaaagtgatttatgtttagata 4894150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 525 - 557
Target Start/End: Original strand, 8481299 - 8481331
Alignment:
Q  525 taaaaatcaattcttgaatcaaaagctacaaat 557  Q
    ||||||||||||||||||||||||||| |||||    
T  8481299 taaaaatcaattcttgaatcaaaagctccaaat 8481331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 544 - 580
Target Start/End: Original strand, 21234576 - 21234612
Alignment:
Q  544 caaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    |||||||||||||| || |||||||||||||||||||    
T  21234576 caaaagctacaaattctagcttcaagtagaatcaatt 21234612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 450 - 682
Target Start/End: Original strand, 5724585 - 5724821
Alignment:
Q  450 tgaaagttagttgaaggtaaactgatttttgtttggataa--tcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaa 547  Q
    ||||||||| ||||||||||| |||||| |||||| |||   || | ||||| |||||| ||   || |||  |||||||||||||||| | |||| |||    
T  5724585 tgaaagttaattgaaggtaaagtgatttgtgtttgaatatgttcatataaaagtgagttaaatgatatatttgtgtgtaaaaatcaattatagaataaaa 5724684  T
Q  548 agctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacattttagaatcaattctacacttc--caa 645  Q
    || |||||||||| |||||||||||||||||||||||| ||||||||| |||| | ||||| ||  | ||||| | |||||||||||||||||||   ||    
T  5724685 agttacaaatcctagcttcaagtagaatcaattttggaggcaaaatcaattctacctgaaagcatccaaacatgtcagaatcaattctacacttctagaa 5724784  T
Q  646 atcattttgaaccctttagaagtggaaccaagcatac 682  Q
     | ||||||  |||| ||||||||||||||| |||||    
T  5724785 ttaattttggcccctctagaagtggaaccaaacatac 5724821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 527 - 639
Target Start/End: Complemental strand, 4910959 - 4910847
Alignment:
Q  527 aaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacattttaga 626  Q
    |||||||||||| ||||||||||||||||||| | ||||||||||||||||||||| || ||| ||||| ||||  ||||   ||| | ||||| | |||    
T  4910959 aaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatttttgaggcagaatcaattctaattgacgacaaccaaacatgtcaga 4910860  T
Q  627 atcaattctacac 639  Q
    |||||||||||||    
T  4910859 atcaattctacac 4910847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 427 - 558
Target Start/End: Complemental strand, 34911095 - 34910967
Alignment:
Q  427 attttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggataatcgtgtaaaaatgagttcaagtttaaattcatgtgta 526  Q
    ||||||||||||||||||| |||| ||||| |||||||||| || |||||| |||||||||| || ||||||| | |||| || | |||  |  |||||     
T  34911095 attttgagtgaattgattccgactaaaagtgagttgaaggt-aagtgatttatgtttggatattcatgtaaaagttagttaaactataa--ttgtgtgtc 34910999  T
Q  527 aaaatcaattcttgaatcaaaagctacaaatc 558  Q
    |||||||||||| |||||||||||||||||||    
T  34910998 aaaatcaattctagaatcaaaagctacaaatc 34910967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 427 - 637
Target Start/End: Original strand, 434168 - 434381
Alignment:
Q  427 attttgagt-gaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggataa--tcgtgtaaaaatgagttcaagtttaaattcatgt 523  Q
    ||||||||| |||| |||| || || ||||| ||||| ||||||| |||||| ||||||||||   |||||||||| |||||| || |||||||| ||||    
T  434168 attttgagttgaatggattatggctaaaagtgagttgcaggtaaaatgatttgtgtttggatatattcgtgtaaaagtgagttgaaatttaaatttatgt 434267  T
Q  524 gtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacatttt 623  Q
     ||||||||||||||  ||||||||||||  |||  |  |||||| || |||||||| || ||| ||||||| ||||  | |||| |||   || |||||    
T  434268 ataaaaatcaattctaaaatcaaaagctattaattttaacttcaaatataatcaattatgaaagaaaaatcaattctaatcgaaagcaagtaaatatttt 434367  T
Q  624 agaatcaattctac 637  Q
    ||||| ||||||||    
T  434368 agaatgaattctac 434381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 437 - 644
Target Start/End: Original strand, 765327 - 765537
Alignment:
Q  437 aattgattctgactgaaagttagttgaaggtaaactgatttttgtttggataa-----tcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaat 531  Q
    |||||||||| ||| ||||| ||||||| ||||| |||||| |||||  |||      || |||||||||||||| || | ||||||  | | ||| |||    
T  765327 aattgattctaactaaaagtaagttgaaagtaaagtgatttgtgtttccatacattcttcttgtaaaaatgagttgaactataaatt--tctttaataat 765424  T
Q  532 caattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacattttagaatcaa 631  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||| | ||  ||||| || |||| ||| ||| ||| | ||||  | ||||||||    
T  765425 caattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattcttgagccaaaaccagttctacttaaaagcaaccaaacacgtcagaatcaa 765524  T
Q  632 ttctacacttcca 644  Q
    |||||||| ||||    
T  765525 ttctacacatcca 765537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 532 - 593
Target Start/End: Original strand, 7952748 - 7952809
Alignment:
Q  532 caattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaat 593  Q
    ||||||| ||||||||||||||||||||| |||||||||||||| ||||||||| |||||||    
T  7952748 caattctagaatcaaaagctacaaatcctcgcttcaagtagaataaattttggaggcaaaat 7952809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 521 - 594
Target Start/End: Complemental strand, 30927100 - 30927027
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatc 594  Q
    ||||||||||||||||||  ||||||||||||| |||| | |||||||||| |||||||| |||||||||||||    
T  30927100 tgtgtaaaaatcaattctataatcaaaagctacgaatcttagcttcaagtataatcaattctggaagcaaaatc 30927027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 541 - 585
Target Start/End: Complemental strand, 16540144 - 16540100
Alignment:
Q  541 aatcaaaagctacaaatcctggcttcaagtagaatcaattttgga 585  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  16540144 aatcaaaagctacaaatcctagcttcaagtagaatcaattttgga 16540100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 436 - 639
Target Start/End: Complemental strand, 26280748 - 26280544
Alignment:
Q  436 gaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggataa-tcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaa 534  Q
    ||||||||| ||| | |||||  |||||||||||| | |||| ||||| ||||  |  ||||||| |||||| || | ||||||  |  |||||||||||    
T  26280748 gaattgattatgattaaaagtgggttgaaggtaaaataatttatgtttagatatgttatgtaaaagtgagtttaactataaatttgtacgtaaaaatcaa 26280649  T
Q  535 ttcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacattttagaatcaattc 634  Q
    || | ||||||||| |||||||| || ||||||||| ||||||||| | || ||||||||| |||| |   ||| ||||| ||||| | | |||||||||    
T  26280648 ttttggaatcaaaaactacaaattctagcttcaagtggaatcaattcttgaggcaaaatcaattctaccaaaaaacaatcaaacatgtcaaaatcaattc 26280549  T
Q  635 tacac 639  Q
    |||||    
T  26280548 tacac 26280544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 522 - 641
Target Start/End: Complemental strand, 2234571 - 2234452
Alignment:
Q  522 gtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacatt 621  Q
    |||| |||||||||||| |||||||||||| ||  |  | ||||||||| |||||||||||| | ||||||||| |||| || ||||  |||| |||||     
T  2234571 gtgttaaaatcaattctagaatcaaaagcttcagtttttagcttcaagttgaatcaattttgaaggcaaaatcaattctactcgaaagtaatcgaacatg 2234472  T
Q  622 ttagaatcaattctacactt 641  Q
    || |||||| ||||||||||    
T  2234471 tttgaatcagttctacactt 2234452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 392 - 470
Target Start/End: Original strand, 34026382 - 34026460
Alignment:
Q  392 ttagtgtatgtttggttatgcaatgacaagaatcaattttgagtgaattgattctgactgaaagttagttgaaggtaaa 470  Q
    ||||||| ||||||||| |||  ||||||||||  ||||||||||||||||||||| || ||||| |||||||| ||||    
T  34026382 ttagtgtgtgtttggttttgctgtgacaagaatatattttgagtgaattgattctggctaaaagtgagttgaagataaa 34026460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 427 - 593
Target Start/End: Complemental strand, 34621039 - 34620871
Alignment:
Q  427 attttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggat--aatcgtgtaaaaatgagttcaagtttaaattcatgtg 524  Q
    ||||||||||||| ||||||| ||  || | ||||||||||||| |||||| |||||||||  | |  ||||||| |||||| ||   ||||||   |||    
T  34621039 attttgagtgaatggattctggctagaattgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtg 34620940  T
Q  525 taaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaat 593  Q
    |||||||||||||| |||||| ||||||  | | || |||||| ||||||||||||  ||| |||||||    
T  34620939 taaaaatcaattctagaatcagaagctatgatttctagcttcatgtagaatcaattccggaggcaaaat 34620871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 427 - 593
Target Start/End: Complemental strand, 34748476 - 34748308
Alignment:
Q  427 attttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggat--aatcgtgtaaaaatgagttcaagtttaaattcatgtg 524  Q
    ||||||||||||| ||||||| ||  || | ||||||||||||| |||||| |||||||||  | |  ||||||| |||||| ||   ||||||   |||    
T  34748476 attttgagtgaatggattctggctagaattgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtg 34748377  T
Q  525 taaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaat 593  Q
    |||||||||||||| |||||| ||||||  | | || |||||| ||||||||||||  ||| |||||||    
T  34748376 taaaaatcaattctagaatcagaagctatgatttctagcttcatgtagaatcaattccggaggcaaaat 34748308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 522 - 593
Target Start/End: Complemental strand, 852588 - 852517
Alignment:
Q  522 gtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaat 593  Q
    ||||||||||||||||| |||||| || |||||| | || ||||||||| ||||||||| |||| |||||||    
T  852588 gtgtaaaaatcaattctagaatcagaacctacaatttctagcttcaagttgaatcaattatggaggcaaaat 852517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 521 - 580
Target Start/End: Original strand, 6654118 - 6654177
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    ||||| |||||||| ||| |||| |||||||||||||||| |||||||||||||| ||||    
T  6654118 tgtgtgaaaatcaaatctagaattaaaagctacaaatcctagcttcaagtagaattaatt 6654177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 580
Target Start/End: Original strand, 6895984 - 6896037
Alignment:
Q  527 aaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    ||||| |||||| |||||||||||||||||||||  ||||| ||||||||||||    
T  6895984 aaaataaattctagaatcaaaagctacaaatcctaacttcaggtagaatcaatt 6896037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 467 - 580
Target Start/End: Original strand, 957595 - 957710
Alignment:
Q  467 taaactgatttttgtttggataa--tcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggct 564  Q
    |||| |||||| ||||||||||   || |||||||||||||| || ||||| ||  |||||||||||| ||| | ||||||||| ||| ||||| | |||    
T  957595 taaaatgatttatgtttggatacattcatgtaaaaatgagttaaattttaagtttgtgtgtaaaaatcgattatggaatcaaaaactataaatcttagct 957694  T
Q  565 tcaagtagaatcaatt 580  Q
     |||||| ||||||||    
T  957695 acaagtaaaatcaatt 957710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 547 - 635
Target Start/End: Original strand, 35098228 - 35098315
Alignment:
Q  547 aagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacattttagaatcaattct 635  Q
    ||||||||| | || ||||||| |||||||||||||| | ||||||||| ||||  |||||| ||| ||||||||| ||||||| ||||    
T  35098228 aagctacaatttctagcttcaattagaatcaattttgtaggcaaaatcaattctagttgaaagcaa-ccaacatttcagaatcacttct 35098315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 580
Target Start/End: Complemental strand, 8860569 - 8860502
Alignment:
Q  513 taaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    |||||| |||||| ||||||||||||| | | |||||||||||||| | |||||||| |||| |||||    
T  8860569 taaatttatgtgtcaaaatcaattcttaacttaaaagctacaaatcattgcttcaagcagaagcaatt 8860502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 522 - 580
Target Start/End: Original strand, 1485175 - 1485233
Alignment:
Q  522 gtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    |||| |||||||||||| |||||||||||| ||| | || | |||||||||||||||||    
T  1485175 gtgttaaaatcaattctagaatcaaaagctccaatttctagattcaagtagaatcaatt 1485233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 555
Target Start/End: Complemental strand, 17225937 - 17225875
Alignment:
Q  493 tgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaa 555  Q
    ||||||| |||||| || | ||||||  | |||||||||||||||| ||||||||||||||||    
T  17225937 tgtaaaactgagttgaactataaatttgtatgtaaaaatcaattctagaatcaaaagctacaa 17225875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 676
Target Start/End: Original strand, 25195366 - 25195549
Alignment:
Q  493 tgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaa 592  Q
    ||||||| |||||| || | ||||||  ||| | |||||||||| | |||| |||| ||||||||||  |||||||||||||||||||  ||| ||| ||    
T  25195366 tgtaaaagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtagaatcaattccggaggcagaa 25195463  T
Q  593 tcatttcttcttgaaatcaatccaacattttagaatcaattctacacttcca-aatc-attttgaaccctttagaagtggaaccaa 676  Q
    ||| || | || || | ||| | ||||| | |||||||||| ||||| |||| |||| ||||||   ||| |||||||||||||||    
T  25195464 tcaattatactcgatagcaaccaaacatgtcagaatcaattatacacatccagaatcaattttggttcctctagaagtggaaccaa 25195549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 386 - 488
Target Start/End: Original strand, 28466875 - 28466977
Alignment:
Q  386 cactacttagtgtatgtttggttatgcaatgacaagaatcaattttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttgg 485  Q
    |||| |||||||||||||||||| |||   || || ||   ||||||||||||||||||||| || ||| | ||||||||||| | || ||| |||||||    
T  28466875 cacttcttagtgtatgtttggttctgcggcgagaaaaaatgattttgagtgaattgattctggctaaaattgagttgaaggtatagtggtttatgtttgg 28466974  T
Q  486 ata 488  Q
    |||    
T  28466975 ata 28466977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 386 - 488
Target Start/End: Complemental strand, 34736858 - 34736756
Alignment:
Q  386 cactacttagtgtatgtttggttatgcaatgacaagaatcaattttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttgg 485  Q
    |||| |||||||||||||||||| |||   || || ||   ||||||||||||||||||||| || ||| | ||||||||||| | || ||| |||||||    
T  34736858 cacttcttagtgtatgtttggttctgcggcgagaaaaaatgattttgagtgaattgattctggctaaaattgagttgaaggtatagtggtttatgtttgg 34736759  T
Q  486 ata 488  Q
    |||    
T  34736758 ata 34736756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 437 - 637
Target Start/End: Complemental strand, 32928035 - 32927833
Alignment:
Q  437 aattgattctgactgaaagttagttgaaggtaaactgatttttgtttggataa--tcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaa 534  Q
    |||||||||| ||| ||| | ||||||||| ||| |||||| ||||||||||   || ||||||| |||||| || | ||||||  ||||||||||| ||    
T  32928035 aattgattcttactaaaattgagttgaaggcaaagtgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaa 32927936  T
Q  535 ttcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacattttagaatcaattc 634  Q
    ||||  |||||||||||||||||||| ||||||||||||||||| | | || ||||||||| |||| || |||| ||| | ||||| | ||| |||||||    
T  32927935 ttctataatcaaaagctacaaatcctagcttcaagtagaatcaactattgaggcaaaatcaattctactggaaagcaaccaaacatgtcagagtcaattc 32927836  T
Q  635 tac 637  Q
    |||    
T  32927835 tac 32927833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 520 - 600
Target Start/End: Original strand, 44141077 - 44141157
Alignment:
Q  520 atgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttct 600  Q
    |||||| |||||||| ||| ||||||||| |||||||||||  ||||||||||||||||||||||| ||||||||| ||||    
T  44141077 atgtgtgaaaatcaactctagaatcaaaaactacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattct 44141157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 521 - 600
Target Start/End: Original strand, 4662931 - 4663010
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttct 600  Q
    |||||||||||||||||| ||| ||||||||||||||||| |||||||||||||| ||||  ||| ||||||||| ||||    
T  4662931 tgtgtaaaaatcaattctagaaacaaaagctacaaatcctagcttcaagtagaataaattccggatgcaaaatcaattct 4663010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 493 - 585
Target Start/End: Original strand, 13384654 - 13384746
Alignment:
Q  493 tgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttgga 585  Q
    ||||||| |||||| || | ||||||  ||||| |||||||||||| ||||||||||||||||||  | ||||||| ||||||||||||||||    
T  13384654 tgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaattttagcttcaaatagaatcaattttgga 13384746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 437 - 580
Target Start/End: Original strand, 26100088 - 26100233
Alignment:
Q  437 aattgattctgactgaaagttagttgaaggtaaactgatttttgtttggat--aatcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaa 534  Q
    |||||||||||||| |||   |||||||||||||   |||| |||||||||  | |  ||||||| |||||| ||   ||||||  ||||||||||||||    
T  26100088 aattgattctgactaaaaacgagttgaaggtaaagctatttgtgtttggatgcatttatgtaaaagtgagttgaaccataaatttgtgtgtaaaaatcaa 26100187  T
Q  535 ttcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    || | ||||||||||||||||||||| ||||||| ||||| |||||    
T  26100188 ttatagaatcaaaagctacaaatcctagcttcaaatagaaccaatt 26100233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 521 - 578
Target Start/End: Complemental strand, 35495047 - 35494990
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaa 578  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||||| ||||||||||    
T  35495047 tgtgtaaaaaacaattctagaatcaaaagctacaaatcctagcttcatgtagaatcaa 35494990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 493 - 582
Target Start/End: Complemental strand, 38868583 - 38868494
Alignment:
Q  493 tgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatttt 582  Q
    ||||||| |||||| || | ||||||  ||||| |||||||||| | ||| ||||||||||||||| | |||||||||||||||||||||    
T  38868583 tgtaaaattgagttgaactataaatttgtgtgtgaaaatcaattatagaaccaaaagctacaaatcttagcttcaagtagaatcaatttt 38868494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 523 - 603
Target Start/End: Complemental strand, 10368050 - 10367970
Alignment:
Q  523 tgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttct 603  Q
    ||||||||| |||||| |||||||||||| |||||||| || |||||||||| ||||| |||| || |||||| |||||||    
T  10368050 tgtaaaaatgaattctagaatcaaaagctgcaaatcctagcctcaagtagaaccaattgtggaggcgaaatcaattcttct 10367970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 493 - 580
Target Start/End: Original strand, 15677815 - 15677903
Alignment:
Q  493 tgtaaaaatgagttcaagtttaaattcatgtgtaaaa-atcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    ||||| |||||||| || | ||||||  ||||||||| |||||||||  |||||||||||| ||||||| |||||||||||||||||||    
T  15677815 tgtaacaatgagttgaactataaatttgtgtgtaaaaaatcaattctataatcaaaagctataaatcctagcttcaagtagaatcaatt 15677903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 527 - 646
Target Start/End: Complemental strand, 37684456 - 37684337
Alignment:
Q  527 aaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacattttaga 626  Q
    |||||||||| | ||||||||||| |||||||||  |||||||||||||||||| ||||  |||||||| |||| ||  | | ||| | |||||||  ||    
T  37684456 aaaatcaattttagaatcaaaagccacaaatcctaacttcaagtagaatcaattctggagacaaaatcaattctactccacaacaaccaaacatttcgga 37684357  T
Q  627 atcaattctacacttccaaa 646  Q
    ||||||| ||||| ||||||    
T  37684356 atcaattttacacctccaaa 37684337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 437 - 580
Target Start/End: Original strand, 32994182 - 32994329
Alignment:
Q  437 aattgattctgactgaaagttagttgaaggtaaact--gatttttgtttggat--aatcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatc 532  Q
    ||||||||||| |||||||| ||||||||||||| |  ||||| ||||||||   | || ||||||| | | ||  | | ||||||  ||| ||||||||    
T  32994182 aattgattctggctgaaagtgagttgaaggtaaaatttgatttatgtttggactcattcatgtaaaagtcatttgcactataaatttgtgtataaaaatc 32994281  T
Q  533 aattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    |||||| || |||||||||| ||||| | |||||||||||||||||||    
T  32994282 aattctagactcaaaagctagaaatcatagcttcaagtagaatcaatt 32994329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 600
Target Start/End: Original strand, 16972005 - 16972171
Alignment:
Q  436 gaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggat--aatcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatca 533  Q
    |||||||||| |||| ||||| ||||||||||||| |||||| |||||| ||  | || ||||||| ||| || ||   ||||||  ||| |||||||||    
T  16972005 gaattgattcagactaaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatca 16972104  T
Q  534 attcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttct 600  Q
    |||||  ||| |||| |||||||| || ||||||| || |||||| | || | ||||||||| ||||    
T  16972105 attctaaaattaaaaactacaaattctagcttcaaatacaatcaactctgaaggcaaaatcaattct 16972171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 395 - 583
Target Start/End: Complemental strand, 32767572 - 32767382
Alignment:
Q  395 gtgtatgtttggttatgcaatgacaagaatcaattttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggata-at--- 490  Q
    ||||||||||| || ||   |||||||||| ||||||||||||||||||| ||  | ||||| ||||| | ||||| |||||| |||||||||| ||       
T  32767572 gtgtatgtttgattctgtggtgacaagaattaattttgagtgaattgattatg--taaaagtgagttggatgtaaattgatttatgtttggatacattca 32767475  T
Q  491 cgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttg 583  Q
     |||||||| |||||| ||   |||||| | |||||||| ||| |||| |||||||||||||  |||| | |||||||| | |||||| ||||    
T  32767474 tgtgtaaaagtgagttgaacaataaatttaagtgtaaaagtcagttctcgaatcaaaagctatgaatcttagcttcaagcataatcaactttg 32767382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 492 - 580
Target Start/End: Original strand, 18355849 - 18355935
Alignment:
Q  492 gtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    ||||||||  ||||| || ||||||||  |||||||||||||||| | ||||||||||  ||||||||| |||||||  ||||||||||    
T  18355849 gtgtaaaagggagttgaactttaaatt--tgtgtaaaaatcaattttagaatcaaaagacacaaatcctagcttcaatcagaatcaatt 18355935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 582
Target Start/End: Complemental strand, 30098965 - 30098906
Alignment:
Q  523 tgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatttt 582  Q
    ||||||||| |||||| ||||| |||||||||||| || ||||||| || ||||||||||    
T  30098965 tgtaaaaattaattctagaatcgaaagctacaaattctagcttcaaataaaatcaatttt 30098906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 452 - 580
Target Start/End: Original strand, 38335818 - 38335948
Alignment:
Q  452 aaagttagttgaaggtaaactgatttttgtttggataa--tcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaag 549  Q
    ||||| |||||||||| || |||||| |||| |||||   || ||||||| ||||||  | | ||||||  || |||||||||||||||  |||||||||    
T  38335818 aaagtgagttgaaggtgaattgatttgtgttcggatacattcatgtaaaagtgagttagaatataaatttgtgcgtaaaaatcaattctaaaatcaaaag 38335917  T
Q  550 ctacaaatcctggcttcaagtagaatcaatt 580  Q
    | ||||||| | ||||||| | |||||||||    
T  38335918 caacaaatcttagcttcaactggaatcaatt 38335948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 595
Target Start/End: Original strand, 1836262 - 1836315
Alignment:
Q  543 tcaaaagctacaaatcctggcttcaag-tagaatcaattttggaagcaaaatca 595  Q
    |||||||||||| ||||| |||||||| ||||||||||||| || |||||||||    
T  1836262 tcaaaagctacacatcctagcttcaagttagaatcaattttagaggcaaaatca 1836315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 580
Target Start/End: Original strand, 7244635 - 7244688
Alignment:
Q  527 aaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    |||||||||||| ||||||||| ||||| ||| | | |||||||||||||||||    
T  7244635 aaaatcaattctagaatcaaaaactacatatcttagtttcaagtagaatcaatt 7244688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 614
Target Start/End: Original strand, 11574272 - 11574365
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatc 614  Q
    ||||||||||||||||||  | |||||| ||||||||  | |||| ||||| |||||||| |  ||| |||| || |||| |||||||||||||    
T  11574272 tgtgtaaaaatcaattctatattcaaaatctacaaatttttgctttaagtaaaatcaattctaaaagtaaaaacaattctacttgaaatcaatc 11574365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 638
Target Start/End: Complemental strand, 26668601 - 26668492
Alignment:
Q  529 aatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacattttagaat 628  Q
    |||||||| | |||| |||| ||||||||  | | || |||||||||||||| |||| ||| ||||| |||| || || |  |||| ||||| |||||||    
T  26668601 aatcaattatagaataaaaaactacaaattgtagttttaagtagaatcaattatggaggcagaatcaattctactcgacaagaatcaaacatgttagaat 26668502  T
Q  629 caattctaca 638  Q
    ||||||||||    
T  26668501 caattctaca 26668492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 440
Target Start/End: Complemental strand, 33733198 - 33733153
Alignment:
Q  395 gtgtatgtttggttatgcaatgacaagaatcaattttgagtgaatt 440  Q
    ||||||||||| ||||||| |||||| ||| |||||||||||||||    
T  33733198 gtgtatgtttgattatgcagtgacaataattaattttgagtgaatt 33733153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 585
Target Start/End: Original strand, 36200159 - 36200224
Alignment:
Q  520 atgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttgga 585  Q
    |||||| |||||||||||| ||||||||| | ||||||| |  |||||||| ||||||||| ||||    
T  36200159 atgtgtgaaaatcaattctagaatcaaaatcgacaaatcataacttcaagttgaatcaattctgga 36200224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 8e-26; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 437 - 638
Target Start/End: Complemental strand, 40491721 - 40491518
Alignment:
Q  437 aattgattctgactgaaagttagttgaaggtaaactgatttttgtttggataa--tcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaa 534  Q
    |||||||| ||||| ||||| ||||||||||||| |||||| | ||||||||   || ||||||| |||||| || ||||||||  ||||||||| ||||    
T  40491721 aattgattttgactaaaagtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgagttaaactttaaatttgtgtgtaaaagtcaa 40491622  T
Q  535 ttcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacattttagaatcaattc 634  Q
    |||| ||||||||||||||||| | |  ||||||||||| |||||| || | ||||||||| || |  | |||| ||| | | ||| |||||||||||||    
T  40491621 ttctagaatcaaaagctacaaaacttaacttcaagtagagtcaattctgaaggcaaaatcaattatcttcgaaagcaaccaaccatgttagaatcaattc 40491522  T
Q  635 taca 638  Q
    ||||    
T  40491521 taca 40491518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 398 - 580
Target Start/End: Complemental strand, 45557547 - 45557363
Alignment:
Q  398 tatgtttggttatgcaatgacaagaatcaattttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggat--aatcgtgt 495  Q
    ||||||||||| |||| ||||| ||||  ||||||| |||||||||||||||| ||||| ||||||||||||| |||||| |||||||||  | || |||    
T  45557547 tatgtttggttttgcagtgacaggaattgattttgaatgaattgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgt 45557448  T
Q  496 aaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    |||| |||||| |  |  |||||  ||||||||||||||| || |||| |||||||||| || || ||||| || | ||||||||    
T  45557447 aaaagtgagttgagctacaaatttgtgtgtaaaaatcaatcctagaattaaaagctacagattctagcttctagcaaaatcaatt 45557363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 496 - 633
Target Start/End: Original strand, 41386818 - 41386955
Alignment:
Q  496 aaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatca 595  Q
    |||| |||||| || | ||||||  |||||||| ||||||||| |||| |||||||||||||||| ||||||||||||||||||| || | |  ||||||    
T  41386818 aaaagtgagttgaattataaatttgtgtgtaaatatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattctgaaggtgaaatca 41386917  T
Q  596 tttcttcttgaaatcaatccaacattttagaatcaatt 633  Q
     || | || |||| ||||| ||||| | ||||||||||    
T  41386918 attatactcgaaagcaatcaaacatgtcagaatcaatt 41386955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 522 - 585
Target Start/End: Original strand, 30182325 - 30182388
Alignment:
Q  522 gtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttgga 585  Q
    |||||||||| |||||| |||||||||||||||| |  | ||||||||||||||||||||||||    
T  30182325 gtgtaaaaattaattctagaatcaaaagctacaatttttagcttcaagtagaatcaattttgga 30182388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 426 - 580
Target Start/End: Original strand, 38123597 - 38123753
Alignment:
Q  426 aattttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggataa--tcgtgtaaaaatgagttcaagtttaaattcatgt 523  Q
    |||||||||| |||||||| ||||| ||| | ||||||||||||| | |||| |||| ||| |   || ||||||| |||||| |    ||||||   ||    
T  38123597 aattttgagtaaattgattatgactaaaattgagttgaaggtaaagtaatttgtgttcggacacattcatgtaaaagtgagttgaccaataaatttgagt 38123696  T
Q  524 gtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    ||||||||||||||| |||| | ||||||||| | || |||||||||||||||||||    
T  38123697 gtaaaaatcaattctagaattagaagctacaatttctagcttcaagtagaatcaatt 38123753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 400 - 488
Target Start/End: Original strand, 33853389 - 33853477
Alignment:
Q  400 tgtttggttatgcaatgacaagaatcaattttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggata 488  Q
    ||||||||||||  ||||||| |||  ||||| ||||||||||||||| || | ||| |||||||| |||| |||||| ||||||||||    
T  33853389 tgtttggttatgatatgacaaaaattgatttttagtgaattgattctggctaagagtgagttgaagctaaagtgatttatgtttggata 33853477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 437 - 595
Target Start/End: Original strand, 42344632 - 42344792
Alignment:
Q  437 aattgattctgactgaaagttagttgaaggtaaactgatttttgtttggataa--tcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaa 534  Q
    |||||||||||| |  |||||  |||||| |||| |||||| ||||| ||||   || ||||| |||||||| || || ||||| ||| |||||||||||    
T  42344632 aattgattctgattttaagtttattgaagataaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttatgagtaaaaatcaa 42344731  T
Q  535 ttcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatca 595  Q
    || | |||||| | |||||||||     |||||| |||||| |||| ||||||||||||||    
T  42344732 ttatagaatcagatgctacaaatttcaacttcaaatagaataaattctggaagcaaaatca 42344792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 595
Target Start/End: Original strand, 15903580 - 15903632
Alignment:
Q  543 tcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatca 595  Q
    |||||||||||||||||   ||||||||| ||||||||||||| |||||||||    
T  15903580 tcaaaagctacaaatcccaacttcaagtataatcaattttggaggcaaaatca 15903632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 540 - 580
Target Start/End: Complemental strand, 17111895 - 17111855
Alignment:
Q  540 gaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  17111895 gaatcaaaagctacaaatcatagcttcaagtagaatcaatt 17111855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 638
Target Start/End: Original strand, 26984533 - 26984625
Alignment:
Q  546 aaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacattttagaatcaattctaca 638  Q
    ||||||||||||| | ||||||||||||||||||| |  || ||||||||  ||| ||| |||||| || |||||  || |||||||||||||    
T  26984533 aaagctacaaatcttagcttcaagtagaatcaattctacaaacaaaatcaagtctactttaaatcattcaaacatcataaaatcaattctaca 26984625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 529 - 585
Target Start/End: Original strand, 28725088 - 28725144
Alignment:
Q  529 aatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttgga 585  Q
    |||||||| | |||||||||||||||||| || |||||||||| ||||||| |||||    
T  28725088 aatcaattatagaatcaaaagctacaaattctagcttcaagtataatcaatattgga 28725144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 593
Target Start/End: Original strand, 5489875 - 5489946
Alignment:
Q  522 gtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaat 593  Q
    |||| |||||||||| |  ||||||||||| ||| | || || ||||||||||||||||||||| |||||||    
T  5489875 gtgttaaaatcaattatataatcaaaagctccaatttctagcatcaagtagaatcaattttggaggcaaaat 5489946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 577 - 639
Target Start/End: Complemental strand, 24953776 - 24953715
Alignment:
Q  577 aattttggaagcaaaatcatttcttcttgaaatcaatccaacattttagaatcaattctacac 639  Q
    |||||| || |||||||||||||| |||||||| |||| ||||| ||| ||||||||||||||    
T  24953776 aattttagaggcaaaatcatttctacttgaaattaatcaaacatgtta-aatcaattctacac 24953715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 522 - 580
Target Start/End: Complemental strand, 27571918 - 27571860
Alignment:
Q  522 gtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    |||| |||||||||||| |||||||||||| ||| | ||  ||||||||||||||||||    
T  27571918 gtgttaaaatcaattctagaatcaaaagctccaatttctaacttcaagtagaatcaatt 27571860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 505
Target Start/End: Complemental strand, 17111998 - 17111918
Alignment:
Q  427 attttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggat--aatcgtgtaaaaatgagt 505  Q
    |||||||||||||||||| ||||| ||| | | ||| ||||||| |||||| |||||||||  | || |||||||||||||    
T  17111998 attttgagtgaattgattttgactaaaattgaattgtaggtaaagtgatttgtgtttggatgcattcatgtaaaaatgagt 17111918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 447
Target Start/End: Complemental strand, 40491774 - 40491725
Alignment:
Q  398 tatgtttggttatgcaatgacaagaatcaattttgagtgaattgattctg 447  Q
    ||||||||||| |||  ||||||||||  |||||||||||||||||||||    
T  40491774 tatgtttggttctgcggtgacaagaattgattttgagtgaattgattctg 40491725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 527 - 583
Target Start/End: Complemental strand, 22195915 - 22195859
Alignment:
Q  527 aaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttg 583  Q
    |||||||||| | |||||||||| |||||||| | |||| ||||| |||||||||||    
T  22195915 aaaatcaattttagaatcaaaagttacaaatcatagcttaaagtaaaatcaattttg 22195859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 526 - 598
Target Start/End: Complemental strand, 9818786 - 9818714
Alignment:
Q  526 aaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcattt 598  Q
    ||||||||||||| ||||||||||||||||||| | ||||||||||||||||||| |||| ||||||||||||    
T  9818786 aaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggaggcaaaatcattt 9818714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 521 - 585
Target Start/End: Complemental strand, 38845500 - 38845436
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttgga 585  Q
    ||||| |||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||||||    
T  38845500 tgtgtgaaaatcaattctagaatcaaaaactacaaatcttagcttcaagtagaatcaattttgga 38845436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 513 - 580
Target Start/End: Original strand, 6951325 - 6951392
Alignment:
Q  513 taaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    |||||| ||||||| ||||||||| | |||||||||||||||||||||  ||||||||||||||||||    
T  6951325 taaatttatgtgtacaaatcaattatagaatcaaaagctacaaatcctaacttcaagtagaatcaatt 6951392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 513 - 595
Target Start/End: Complemental strand, 14299395 - 14299313
Alignment:
Q  513 taaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatca 595  Q
    |||||| |||||| |||| ||||||| |||| |||| |||||||||||  ||||||||||||||||||||  |||||||||||    
T  14299395 taaatttatgtgtgaaaaccaattctagaataaaaaactacaaatcctaacttcaagtagaatcaattttaaaagcaaaatca 14299313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 479 - 580
Target Start/End: Original strand, 18851066 - 18851169
Alignment:
Q  479 tgtttggataa--tcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatc 576  Q
    |||||||||||  || ||||||| |||||| || | |||||   ||||| ||||||||||||  |||||||||||||||||| | |||||||||||||||    
T  18851066 tgtttggataacttcatgtaaaagtgagtttaactataaatatgtgtgtgaaaatcaattctataatcaaaagctacaaatcatagcttcaagtagaatc 18851165  T
Q  577 aatt 580  Q
    ||||    
T  18851166 aatt 18851169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 427 - 580
Target Start/End: Complemental strand, 18637436 - 18637282
Alignment:
Q  427 attttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggataa--tcgtgtaaaaat-gagttcaagtttaaattcatgt 523  Q
    |||||||||||||||||||| ||| ||||| ||||||  ||| | |||||| ||||||||||   || | | ||||| ||||| || | |||||   |||    
T  18637436 attttgagtgaattgattctaactaaaagtgagttgagagtacagtgatttgtgtttggatagattctttttaaaattgagttgaactataaatg--tgt 18637339  T
Q  524 gtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    ||||||||||||||| ||||||||||||||  ||| | ||||||||| |||||||||    
T  18637338 gtaaaaatcaattctagaatcaaaagctacttatcttagcttcaagtggaatcaatt 18637282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 437 - 600
Target Start/End: Complemental strand, 36640081 - 36639915
Alignment:
Q  437 aattgattctgactgaaagttagttgaaggtaaactgatttt-tgtttggataa--tcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatca 533  Q
    |||||||| | ||| ||| |||||||||||||||  |||||| ||||| ||||   || ||||||| |||| | ||  |||||||   ||||||||| ||    
T  36640081 aattgattatcactaaaatttagttgaaggtaaagggattttatgttttgataggttcatgtaaaagtgaggtgaacattaaatttgagtgtaaaaaaca 36639982  T
Q  534 attcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttct 600  Q
    ||||| |||| | ||||||||| | |  ||||||||||||||| |||||||| ||||||||| ||||    
T  36639981 attctagaattagaagctacaatttccagcttcaagtagaatctattttggaggcaaaatcaattct 36639915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 488
Target Start/End: Original strand, 36927587 - 36927680
Alignment:
Q  395 gtgtatgtttggttatgcaatgacaagaatcaattttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggata 488  Q
    |||||||||||||| |||| ||| || |||  ||||||| |||||||||||||||||||    || ||| |||||| |||||| ||||||||||    
T  36927587 gtgtatgtttggttttgcattgagaaaaattgattttgactgaattgattctgactgaattagagatgatggtaaagtgatttatgtttggata 36927680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 450
Target Start/End: Complemental strand, 9818920 - 9818864
Alignment:
Q  394 agtgtatgtttggttatgcaatgacaagaatcaattttgagtgaattgattctgact 450  Q
    ||||||||||||||| |||  ||||||||||  |||||||||||||||||||| |||    
T  9818920 agtgtatgtttggttctgcggtgacaagaatttattttgagtgaattgattcttact 9818864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 516 - 582
Target Start/End: Complemental strand, 11648144 - 11648078
Alignment:
Q  516 attcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatttt 582  Q
    |||| ||||| |||||||||| |  ||||||||  |||||||| | |||||||||||||||||||||    
T  11648144 attcgtgtgtgaaaatcaattttataatcaaaatgtacaaatcttagcttcaagtagaatcaatttt 11648078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 521 - 579
Target Start/End: Original strand, 22226264 - 22226322
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaat 579  Q
    ||||||||| | ||||||  ||||||||||||||||| ||  |||||||||||||||||    
T  22226264 tgtgtaaaagttaattctaaaatcaaaagctacaaatactatcttcaagtagaatcaat 22226322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 595
Target Start/End: Original strand, 3970430 - 3970503
Alignment:
Q  523 tgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttca-agtagaatcaattttggaagcaaaatca 595  Q
    |||||||||||| | | || ||||||||||||| |||| |||||| | ||||||||||| |||| |||||||||    
T  3970430 tgtaaaaatcaagtttggagtcaaaagctacaattcctagcttcagattagaatcaattctggaggcaaaatca 3970503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 595
Target Start/End: Original strand, 13171794 - 13171863
Alignment:
Q  526 aaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatca 595  Q
    |||||||| || | |||||||||  |||||||| |  ||||||||||||||||||||||| ||| |||||    
T  13171794 aaaaatcatttatagaatcaaaatttacaaatcttttcttcaagtagaatcaattttggaggcagaatca 13171863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 580
Target Start/End: Complemental strand, 39097313 - 39097244
Alignment:
Q  511 tttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    |||||||| |||||| |||||||||| |  ||| ||||| |||||||  | |||||||||||||||||||    
T  39097313 tttaaatttatgtgtgaaaatcaattatataattaaaagttacaaattttagcttcaagtagaatcaatt 39097244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 495 - 559
Target Start/End: Original strand, 28110440 - 28110504
Alignment:
Q  495 taaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcc 559  Q
    ||||| ||||||||| | ||||||  ||||| ||||||||||||  ||||||||| |||||||||    
T  28110440 taaaagtgagttcaactataaatttgtgtgtgaaaatcaattctaaaatcaaaagttacaaatcc 28110504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 417 - 580
Target Start/End: Original strand, 8604541 - 8604709
Alignment:
Q  417 acaagaatcaattttgagtgaattgattctgactgaaagttagttgaa---ggtaaactgatttttgtttggataa--tcgtgtaaaaatgagttcaagt 511  Q
    ||||||||  |||||||| |||||||||| |||  ||| |||||||||   |||||| |||||| ||||||||||   || ||||||| ||  ||||| |    
T  8604541 acaagaattgattttgagagaattgattccgaccaaaatttagttgaaaaaggtaaagtgatttatgtttggatacattcatgtaaaagtgcattcaact 8604640  T
Q  512 ttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
     ||||||  ||||| |||||||||||| ||||| ||||||||||||| | |||||||||||||||||||    
T  8604641 ataaatttgtgtgtgaaaatcaattctagaatcgaaagctacaaatcttagcttcaagtagaatcaatt 8604709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 521 - 676
Target Start/End: Complemental strand, 35065120 - 35064963
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacat 620  Q
    |||||||||||||||||| ||||||||||  |||||| || |||||||||| |||||||| | || ||||||||| |||| || |||| ||| | || ||    
T  35065120 tgtgtaaaaatcaattctagaatcaaaagtcacaaatactagcttcaagtaaaatcaattattgaggcaaaatcaattctactcgaaagcaaccaaaaat 35065021  T
Q  621 tttagaatcaattctacacttcca-aatc-attttgaaccctttagaagtggaaccaa 676  Q
     | | |||||||||||||| |||| |||| ||||||| ||||  ||||||||||||||    
T  35065020 gtcataatcaattctacacctccataatcaattttgacccctcgagaagtggaaccaa 35064963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 520 - 600
Target Start/End: Original strand, 50061655 - 50061735
Alignment:
Q  520 atgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttct 600  Q
    |||||| |||||||| ||| ||||||||| |||||||||||  ||||||||||||||||||||||| ||||||||| ||||    
T  50061655 atgtgtgaaaatcaactctagaatcaaaaactacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattct 50061735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 521 - 600
Target Start/End: Original strand, 32818398 - 32818477
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttct 600  Q
    |||| ||||||||||||| |||||||||||||||||| || ||||||| ||||||||||| |||| ||||||||| ||||    
T  32818398 tgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaatagaatcaattctggaggcaaaatcaattct 32818477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 496 - 613
Target Start/End: Complemental strand, 26617550 - 26617433
Alignment:
Q  496 aaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatca 595  Q
    |||| |||||| || | |||||| || | |||||||||||| |  |||||||||||||| || || |||||||||||||||| ||||||| |||||||||    
T  26617550 aaaactgagttgaattataaatttatctataaaaatcaattttataatcaaaagctacagattctagcttcaagtagaatcatttttggaggcaaaatca 26617451  T
Q  596 tttcttcttgaaatcaat 613  Q
     |||| || || ||||||    
T  26617450 attctactcgatatcaat 26617433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 608
Target Start/End: Original strand, 49138795 - 49138877
Alignment:
Q  525 taaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaa 608  Q
    |||||||||||| | |||||||||| |||||||||| |||||||||||||| || |||||| ||||||||| || | |||||||    
T  49138795 taaaaatcaattttagaatcaaaagttacaaatcctagcttcaagtagaat-aagtttggaggcaaaatcaattttacttgaaa 49138877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 521 - 595
Target Start/End: Complemental strand, 9134667 - 9134593
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatca 595  Q
    ||||| ||||||||||||  |||||||||||||||||  | ||||||||||| ||||||| |||||| |||||||    
T  9134667 tgtgtgaaaatcaattctaaaatcaaaagctacaaattttagcttcaagtaggatcaattctggaagtaaaatca 9134593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 466 - 673
Target Start/End: Original strand, 46344805 - 46345013
Alignment:
Q  466 gtaaactgatttttgtttggata-atcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggct 564  Q
    ||||| ||||||||||||||||| ||  ||||||| |||||  || ||||||||  ||| ||||||||| |||  ||||||||||||  |||| ||  ||    
T  46344805 gtaaagtgatttttgtttggatacattatgtaaaagtgagtcgaactttaaatttgtgt-taaaaatcacttccagaatcaaaagctggaaattctaact 46344903  T
Q  565 tcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacattttagaatcaattctacacttcca-aatc-attttgaacccttt 662  Q
    ||||||||||| |||| |||| ||||||||| || | ||||||| ||| | ||||| | ||||| |||| ||||| |||| |||| ||||||  |||| |    
T  46344904 tcaagtagaat-aattatggaggcaaaatcaattatacttgaaagcaaccaaacatgtcagaattaattatacacctccataatcaattttgggccctct 46345002  T
Q  663 agaagtggaac 673  Q
    |||||||||||    
T  46345003 agaagtggaac 46345013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 527 - 642
Target Start/End: Complemental strand, 2635214 - 2635099
Alignment:
Q  527 aaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacattttaga 626  Q
    |||||||||||| || ||||||||| |||   || |||||||| | |||||||| |||| ||||||||| |||| ||| ||| ||||| ||||| | | |    
T  2635214 aaaatcaattctagactcaaaagctccaatctctagcttcaagcataatcaattctggaggcaaaatcagttctacttaaaagcaatcaaacatgtcaaa 2635115  T
Q  627 atcaattctacacttc 642  Q
    ||||||| ||||||||    
T  2635114 atcaattttacacttc 2635099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 521 - 580
Target Start/End: Complemental strand, 30357569 - 30357510
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    |||||||||||||||| |  ||||||||||||||||||   |||||||||||||||||||    
T  30357569 tgtgtaaaaatcaattatataatcaaaagctacaaatcacagcttcaagtagaatcaatt 30357510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 522 - 580
Target Start/End: Complemental strand, 9064287 - 9064229
Alignment:
Q  522 gtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    |||| |||||||||||| ||||||||| |||||||| || | |||||||||||||||||    
T  9064287 gtgtgaaaatcaattctagaatcaaaaactacaaattctagtttcaagtagaatcaatt 9064229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 595
Target Start/End: Original strand, 11271587 - 11271640
Alignment:
Q  543 tcaaaagctacaaatcctggcttcaag-tagaatcaattttggaagcaaaatca 595  Q
    |||||||||||||||||| |||||||| ||||||||||| |||| |||||||||    
T  11271587 tcaaaagctacaaatcctagcttcaagttagaatcaattctggaggcaaaatca 11271640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 430 - 576
Target Start/End: Original strand, 20712749 - 20712897
Alignment:
Q  430 ttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggat--aatcgtgtaaaaatgagttcaagtttaaattcatgtgtaa 527  Q
    |||||||||||||||| |||| ||| | ||||||||||||| | |||| |||||||||  |||| ||||   ||||| | || |  ||| |  ||||| |    
T  20712749 ttgagtgaattgattccgactaaaaatgagttgaaggtaaagttatttgtgtttggatacaatcatgtagcgatgagctgaactacaaaattgtgtgtga 20712848  T
Q  528 aaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatc 576  Q
    |||||||||||| ||| |||| ||||||||  | |||||||||||||||    
T  20712849 aaatcaattcttcaataaaaaactacaaattttagcttcaagtagaatc 20712897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 638
Target Start/End: Original strand, 29779106 - 29779199
Alignment:
Q  545 aaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacattttagaatcaattctaca 638  Q
    ||||||||||||| || ||||||||||||||||||| |  ||||||||||| ||||  || ||||||  | |||||  || |||||||||||||    
T  29779106 aaaagctacaaattctagcttcaagtagaatcaattctacaagcaaaatcaattctcttttaaatcatccaaacatgataaaatcaattctaca 29779199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 493 - 600
Target Start/End: Original strand, 31012738 - 31012846
Alignment:
Q  493 tgtaaaaatgagttcaagtttaaattcatgtgt-aaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaa 591  Q
    |||||||||||||| || | |||||  |||||| |||||||||||||  ||| |||| ||||||||||| | ||  ||||||||||||| || || ||||    
T  31012738 tgtaaaaatgagttgaactataaatatatgtgtgaaaaatcaattctaaaattaaaaactacaaatcctagttttgagtagaatcaattctgaaatcaaa 31012837  T
Q  592 atcatttct 600  Q
    |||| ||||    
T  31012838 atcagttct 31012846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 580
Target Start/End: Original strand, 55186989 - 55187049
Alignment:
Q  520 atgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    |||||| ||||||||||||  ||| ||||| ||||||||||  ||||||||||||||||||    
T  55186989 atgtgtgaaaatcaattctataattaaaagttacaaatcctaacttcaagtagaatcaatt 55187049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 580
Target Start/End: Complemental strand, 14596742 - 14596687
Alignment:
Q  525 taaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    |||||||||||||| ||||||||| || |||| | | |||||||||||||||||||    
T  14596742 taaaaatcaattctagaatcaaaaactgcaaaacatagcttcaagtagaatcaatt 14596687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 521 - 559
Target Start/End: Complemental strand, 45011931 - 45011893
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctacaaatcc 559  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  45011931 tgtgtgaaaatcaattctagaatcaaaagctacaaatcc 45011893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 562 - 595
Target Start/End: Complemental strand, 33843694 - 33843661
Alignment:
Q  562 gcttcaagtagaatcaattttggaagcaaaatca 595  Q
    |||||||||||||||||||||||| |||||||||    
T  33843694 gcttcaagtagaatcaattttggaggcaaaatca 33843661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 488
Target Start/End: Complemental strand, 33843864 - 33843803
Alignment:
Q  427 attttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggata 488  Q
    ||||||| ||||||||||||| || ||||| ||||| | ||||| |||||| ||||||||||    
T  33843864 attttgattgaattgattctggctaaaagtgagttggatgtaaagtgatttatgtttggata 33843803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 452 - 488
Target Start/End: Original strand, 1023875 - 1023911
Alignment:
Q  452 aaagttagttgaaggtaaactgatttttgtttggata 488  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  1023875 aaagtgagttgaaggtaaagtgatttttgtttggata 1023911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 513 - 549
Target Start/End: Original strand, 4905903 - 4905939
Alignment:
Q  513 taaattcatgtgtaaaaatcaattcttgaatcaaaag 549  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  4905903 taaattcttgtttaaaaatcaattcttgaatcaaaag 4905939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 493 - 576
Target Start/End: Complemental strand, 16552040 - 16551959
Alignment:
Q  493 tgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatc 576  Q
    ||||||| |||||| || | ||||||  ||||| |||||||||||| |||  |||| ||||||||||| |||||||| ||||||    
T  16552040 tgtaaaagtgagttgaactataaatt--tgtgtgaaaatcaattctagaactaaaaactacaaatcctagcttcaaggagaatc 16551959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 16644033 - 16643981
Alignment:
Q  523 tgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaat 575  Q
    |||||||||||||||| ||||||||| ||| ||||  | ||||||||||||||    
T  16644033 tgtaaaaatcaattctagaatcaaaatctataaattatagcttcaagtagaat 16643981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 523 - 595
Target Start/End: Complemental strand, 25927363 - 25927291
Alignment:
Q  523 tgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatca 595  Q
    ||||||||||||||||  ||||| |||||||||||| |  || ||| ||||||||||| |||| ||| |||||    
T  25927363 tgtaaaaatcaattctgaaatcataagctacaaatcttaactccaaatagaatcaattatggaggcataatca 25927291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 523 - 551
Target Start/End: Complemental strand, 29729040 - 29729012
Alignment:
Q  523 tgtaaaaatcaattcttgaatcaaaagct 551  Q
    |||||||||||||||||||||||||||||    
T  29729040 tgtaaaaatcaattcttgaatcaaaagct 29729012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 520 - 580
Target Start/End: Complemental strand, 30357705 - 30357645
Alignment:
Q  520 atgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    |||||||||||| |||| |  |||||||||||||| ||| | ||||||| |||||||||||    
T  30357705 atgtgtaaaaataaattatataatcaaaagctacagatcatagcttcaattagaatcaatt 30357645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 522 - 614
Target Start/End: Complemental strand, 6021860 - 6021768
Alignment:
Q  522 gtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatc 614  Q
    ||||||||||| ||| | ||||||||||||||| ||||| ||||||||||||||| ||| | || ||||||||| |||| |||||||||||||    
T  6021860 gtgtaaaaatctattatagaatcaaaagctacatatcctagcttcaagtagaatcgattctagaggcaaaatcaattctacttgaaatcaatc 6021768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 493 - 585
Target Start/End: Complemental strand, 1514428 - 1514336
Alignment:
Q  493 tgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttgga 585  Q
    |||||||||||||| ||   ||||||  |||||||||||||||| |  ||| |||||||||||||||| |||||||||||||| |||||||||    
T  1514428 tgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagcttcaagtagaataaattttgga 1514336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 521 - 576
Target Start/End: Complemental strand, 11049307 - 11049252
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatc 576  Q
    |||||||||||||||| | ||||||||||||||||||||| |||||||||||||||    
T  11049307 tgtgtaaaaatcaattttagaatcaaaagctacaaatcctagcttcaagtagaatc 11049252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 521 - 640
Target Start/End: Original strand, 28083916 - 28084035
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacat 620  Q
    ||||||||||| |||| | |||||||||||||||||| || |||||||||||||||||||  | |  |||||||| |||| || |||| ||| | || ||    
T  28083916 tgtgtaaaaattaattatagaatcaaaagctacaaattctagcttcaagtagaatcaattacgaagacaaaatcaattctactcgaaaacaaccaaatat 28084015  T
Q  621 tttagaatcaattctacact 640  Q
     | |||||||||||||||||    
T  28084016 gtcagaatcaattctacact 28084035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 392 - 462
Target Start/End: Original strand, 40662888 - 40662958
Alignment:
Q  392 ttagtgtatgtttggttatgcaatgacaagaatcaattttgagtgaattgattctgactgaaagttagttg 462  Q
    ||||||||||||||||| ||   |||||||||| ||||||||||||||||||||||||| | |||||||||    
T  40662888 ttagtgtatgtttggttctgttttgacaagaattaattttgagtgaattgattctgacttatagttagttg 40662958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 525 - 591
Target Start/End: Original strand, 48549044 - 48549110
Alignment:
Q  525 taaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaa 591  Q
    |||||||||||||| |||||| ||||||||| | || |||||||||||||||||||||||| |||||    
T  48549044 taaaaatcaattctagaatcagaagctacaatttctagcttcaagtagaatcaattttggaggcaaa 48549110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 437 - 571
Target Start/End: Complemental strand, 7524256 - 7524120
Alignment:
Q  437 aattgattctgactgaaagttagttgaaggtaaactgatttttgtttggataa--tcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaa 534  Q
    |||||||||| ||| ||||| || | |||||||| |||||| |||||||| |   |  ||||||| |||||| || | ||||||  ||||||||||||||    
T  7524256 aattgattctaactaaaagtgagctcaaggtaaagtgatttgtgtttggacacatttatgtaaaagtgagttgaactataaatttgtgtgtaaaaatcaa 7524157  T
Q  535 ttcttgaatcaaaagctacaaatcctggcttcaagta 571  Q
    ||||  ||||||||||||||||||||  |||||||||    
T  7524156 ttctataatcaaaagctacaaatcctaacttcaagta 7524120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 390 - 556
Target Start/End: Complemental strand, 34915256 - 34915088
Alignment:
Q  390 acttagtgtatgtttggttatgcaatgacaagaatcaattttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggat-- 487  Q
    |||| |||||||||||||| |||  |||| |||||  ||||| |||||||| ||  ||||| ||||| ||||| ||||||| |||||| |||||| ||      
T  34915256 acttggtgtatgtttggttctgctttgactagaattgattttaagtgaatttataatgactaaaagtgagttgcaggtaaaatgatttatgtttgaatac 34915157  T
Q  488 aatcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaa 556  Q
    | || ||||||| |||||| || | |||| |  ||||| | |||||||||| |||||||||||||||||    
T  34915156 attcatgtaaaagtgagttgaattataaaatggtgtgttagaatcaattctagaatcaaaagctacaaa 34915088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 521 - 574
Target Start/End: Original strand, 51500862 - 51500915
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaa 574  Q
    |||||||||||||||||| ||||||||||||||||||||| | |||||||||||    
T  51500862 tgtgtaaaaatcaattctagaatcaaaagctacaaatcctaggttcaagtagaa 51500915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 513 - 580
Target Start/End: Complemental strand, 3016227 - 3016160
Alignment:
Q  513 taaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    |||||| ||||||||| ||||||||| |||||||||||||||||| ||   |||||||||||||||||    
T  3016227 taaatttatgtgtaaacatcaattctagaatcaaaagctacaaattctaagttcaagtagaatcaatt 3016160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 522 - 580
Target Start/End: Original strand, 28287365 - 28287423
Alignment:
Q  522 gtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    |||| ||||||||||||  |||||||||||||||||||| ||||||||||||| |||||    
T  28287365 gtgttaaaatcaattctaaaatcaaaagctacaaatccttgcttcaagtagaaccaatt 28287423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 525 - 682
Target Start/End: Original strand, 31362237 - 31362392
Alignment:
Q  525 taaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacatttta 624  Q
    |||||||||||||| |||||||||||||||||| ||  ||||    |||||||||| |||| ||||||||| |||| | ||||| ||| | ||||| |||    
T  31362237 taaaaatcaattctagaatcaaaagctacaaattctaacttc----agaatcaattatggaggcaaaatcaattctacatgaaagcaaccaaacatgtta 31362332  T
Q  625 gaatcaattctacacttcca-aatc-attttgaaccctttagaagtggaaccaagcatac 682  Q
    || || ||||||||| || | |||| | ||||| || | ||||||| |||||||||||||    
T  31362333 gagtcgattctacacatctagaatcaagtttgacccttctagaagtagaaccaagcatac 31362392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 521 - 577
Target Start/End: Complemental strand, 30557561 - 30557505
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatca 577  Q
    ||||| |||||||||||| ||||||||| ||||||||||| ||||||| ||||||||    
T  30557561 tgtgtgaaaatcaattctagaatcaaaaactacaaatcctagcttcaactagaatca 30557505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 391 - 487
Target Start/End: Original strand, 47978330 - 47978426
Alignment:
Q  391 cttagtgtatgtttggttatgcaatgacaagaatcaattttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggat 487  Q
    |||||||||||| ||||| |||  ||||||||||  |||||||||||||||||| ||  | ||||| ||||||| ||||| |||||| || ||||||    
T  47978330 cttagtgtatgtatggttttgcggtgacaagaattcattttgagtgaattgattttgggtaaaagtgagttgaatgtaaagtgatttatggttggat 47978426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 522 - 576
Target Start/End: Complemental strand, 3515874 - 3515820
Alignment:
Q  522 gtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatc 576  Q
    ||||||||||||||||| |||| ||||||||||| | || |||||||||||||||    
T  3515874 gtgtaaaaatcaattctagaatgaaaagctacaatttctagcttcaagtagaatc 3515820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 529 - 575
Target Start/End: Original strand, 40663015 - 40663061
Alignment:
Q  529 aatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaat 575  Q
    ||||||||||||||||||||||||||||| || |||| |||||||||    
T  40663015 aatcaattcttgaatcaaaagctacaaatactagctttaagtagaat 40663061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 469
Target Start/End: Complemental strand, 14644909 - 14644832
Alignment:
Q  392 ttagtgtatgtttggttatgcaatgacaagaatcaattttgagtgaattgattctgactgaaagttagttgaaggtaa 469  Q
    |||||||||||||| || |||  |||||||||| |||||| |||||||||||| ||||| |||||  |||||| ||||    
T  14644909 ttagtgtatgtttgattttgcggtgacaagaattaattttaagtgaattgattatgactaaaagtgtgttgaaagtaa 14644832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 487
Target Start/End: Original strand, 6932116 - 6932176
Alignment:
Q  427 attttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggat 487  Q
    ||||||| |||||||||||||||| ||||| ||||||| ||||| |||| || ||||||||    
T  6932116 attttgaatgaattgattctgactaaaagtgagttgaatgtaaaatgatcttcgtttggat 6932176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 580
Target Start/End: Original strand, 7790670 - 7790729
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    |||||||||||||||| | ||||| ||| ||||||||| |  ||||||||||||||||||    
T  7790670 tgtgtaaaaatcaattatagaatctaaatctacaaatcataacttcaagtagaatcaatt 7790729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 593
Target Start/End: Original strand, 10324967 - 10325038
Alignment:
Q  522 gtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaat 593  Q
    ||||||||||||||| | |||||||||||||||| | ||  ||||||||||| |||||| | || |||||||    
T  10324967 gtgtaaaaatcaattatagaatcaaaagctacaatttctatcttcaagtagactcaattctagaggcaaaat 10325038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 582
Target Start/End: Complemental strand, 27849194 - 27849135
Alignment:
Q  523 tgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatttt 582  Q
    |||||||||||||||| | ||||||||||||| ||| | |||||||||||  ||||||||    
T  27849194 tgtaaaaatcaattctagtatcaaaagctacacatcgtagcttcaagtagtttcaatttt 27849135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 480
Target Start/End: Original strand, 31362127 - 31362218
Alignment:
Q  389 tacttagtgtatgtttggttatgcaatgacaagaatcaattttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttg 480  Q
    |||||||  ||||||||||||| |  |||||| |||  ||||| | |||||||||| ||||||||||| | ||||||||||  |||||||||    
T  31362127 tacttagcatatgtttggttattccgtgacaataattgattttaaatgaattgattatgactgaaagtgaattgaaggtaacatgatttttg 31362218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 477
Target Start/End: Complemental strand, 35682102 - 35682019
Alignment:
Q  394 agtgtatgtttggttatgcaatgacaagaatcaattttgagtgaattgattctgactgaaagttagttgaaggtaaactgattt 477  Q
    ||||||||||||||| ||||||||||| | |  || || ||| ||||||||| |||| ||| | ||||||||||||| ||||||    
T  35682102 agtgtatgtttggttgtgcaatgacaaaagttgatcttaagtaaattgattcagactaaaaatgagttgaaggtaaaatgattt 35682019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 578
Target Start/End: Complemental strand, 33693077 - 33693020
Alignment:
Q  522 gtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaag-tagaatcaa 578  Q
    ||||||||||||||| | |||||||||||||||| | || |||||||| |||||||||    
T  33693077 gtgtaaaaatcaattatagaatcaaaagctacaatttctagcttcaagttagaatcaa 33693020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 428 - 488
Target Start/End: Original strand, 5868165 - 5868225
Alignment:
Q  428 ttttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggata 488  Q
    ||||||||||||||||| ||||| ||||  ||| ||||||||| | |||| ||||||||||    
T  5868165 ttttgagtgaattgattatgactaaaagcgagtcgaaggtaaaatcatttgtgtttggata 5868225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 521 - 553
Target Start/End: Original strand, 15084623 - 15084655
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctac 553  Q
    |||||||||||||||||| ||||||||||||||    
T  15084623 tgtgtaaaaatcaattctagaatcaaaagctac 15084655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 493 - 577
Target Start/End: Original strand, 30850399 - 30850483
Alignment:
Q  493 tgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatca 577  Q
    ||||||| |||||| || | ||||||  | ||| ||||||||||||  ||| |||| ||||||||||| | ||||||||||||||    
T  30850399 tgtaaaagtgagttgaactataaatttgtatgttaaaatcaattctaaaattaaaaactacaaatcctagtttcaagtagaatca 30850483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 396 - 444
Target Start/End: Original strand, 48507670 - 48507718
Alignment:
Q  396 tgtatgtttggttatgcaatgacaagaatcaattttgagtgaattgatt 444  Q
    ||||||||||||| |||||||| || ||| |||||||||||| ||||||    
T  48507670 tgtatgtttggttttgcaatgataaaaattaattttgagtgatttgatt 48507718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 427 - 467
Target Start/End: Original strand, 52013431 - 52013471
Alignment:
Q  427 attttgagtgaattgattctgactgaaagttagttgaaggt 467  Q
    |||||||||||||||||||||||| || || ||||||||||    
T  52013431 attttgagtgaattgattctgactaaatgtaagttgaaggt 52013471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 527 - 682
Target Start/End: Complemental strand, 31877 - 31720
Alignment:
Q  527 aaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacattttaga 626  Q
    |||||||||||   |||||||||||||||||||| |||||||||| ||||||||||||| ||| ||||| || | || || | ||| | ||||| | |||    
T  31877 aaaatcaattcaataatcaaaagctacaaatcctagcttcaagtataatcaattttggaggcagaatcaattttactcgacaacaaccaaacatgtcaga 31778  T
Q  627 atcaattctacacttcca-aatc-attttgaaccctttagaagtggaaccaagcatac 682  Q
    ||||||||||||| || | |||| ||||||  | || ||||||||||||||| |||||    
T  31777 atcaattctacacctctagaatcaattttggtcactctagaagtggaaccaaacatac 31720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 501 - 639
Target Start/End: Complemental strand, 44771771 - 44771633
Alignment:
Q  501 tgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttct 600  Q
    |||||| || || ||||| ||||||||||||||||| | |||||||||||||||||| || | || | ||||||||||||  ||| |||||| || ||||    
T  44771771 tgagttgaacttcaaattaatgtgtaaaaatcaattttagaatcaaaagctacaaattctagatttaggtagaatcaattccggaggcaaaaccaattct 44771672  T
Q  601 tcttgaaatcaatccaacattttagaatcaattctacac 639  Q
     | ||| | ||  ||||||| | ||||||| ||||||||    
T  44771671 acctgatagcagcccaacatgtcagaatcagttctacac 44771633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 437 - 595
Target Start/End: Original strand, 37334976 - 37335136
Alignment:
Q  437 aattgattctgactgaaagttagttgaaggtaaactgatttttgtttggataa--tcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaa 534  Q
    ||||||||| |||| ||| | ||||||||||||| |||||| ||| || |||   || | |||||||||||| ||   | |||||| |||||||||||||    
T  37334976 aattgattccgactaaaattgagttgaaggtaaagtgatttatgtctgaatacattcatataaaaatgagttgaacaatgaattcaagtgtaaaaatcaa 37335075  T
Q  535 ttcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatca 595  Q
    |||| |||||||||||||| | | ||  |||| |||| |||||||| | || |||||||||    
T  37335076 ttctagaatcaaaagctacgatttctaacttctagtaaaatcaattctcgaggcaaaatca 37335136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 513 - 580
Target Start/End: Original strand, 40147870 - 40147937
Alignment:
Q  513 taaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    |||||||| ||||  ||||||||||| |||||||||||| ||||| || |||| ||||||||||||||    
T  40147870 taaattcaagtgttgaaatcaattctagaatcaaaagctccaaattctagcttgaagtagaatcaatt 40147937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 493 - 580
Target Start/End: Complemental strand, 52364136 - 52364049
Alignment:
Q  493 tgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    ||||||| |||||| || | |||||| |||| | |||||||||| | ||||||||||||| ||||| | ||||||||||||| |||||    
T  52364136 tgtaaaagtgagttgaactgtaaatttatgtttgaaaatcaattatagaatcaaaagctataaatcatagcttcaagtagaaacaatt 52364049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 521 - 594
Target Start/End: Original strand, 32523368 - 32523442
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggctt-caagtagaatcaattttggaagcaaaatc 594  Q
    |||||||||||||||| | |||||||||||||||||||||  ||| |||||||||  |||| |||| ||||||||    
T  32523368 tgtgtaaaaatcaattttagaatcaaaagctacaaatcctaacttccaagtagaaataattatggaggcaaaatc 32523442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 580
Target Start/End: Complemental strand, 35058118 - 35058065
Alignment:
Q  527 aaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    ||||||||||||  ||| |||||||||||||||| |||||| ||||||||||||    
T  35058118 aaaatcaattctataattaaaagctacaaatcctagcttcatgtagaatcaatt 35058065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 572 - 641
Target Start/End: Original strand, 48410891 - 48410960
Alignment:
Q  572 gaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacattttagaatcaattctacactt 641  Q
    |||||||||||||| ||||||||| |||| || |||| ||||| ||||| | ||||||||||| ||||||    
T  48410891 gaatcaattttggaggcaaaatcaattctactcgaaagcaatcaaacatctcagaatcaattccacactt 48410960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 540 - 600
Target Start/End: Original strand, 7717368 - 7717428
Alignment:
Q  540 gaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttct 600  Q
    |||||| ||||||||| | || ||||||||||||||||||| |||| ||||||||| ||||    
T  7717368 gaatcagaagctacaatttctagcttcaagtagaatcaattctggaggcaaaatcaattct 7717428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 392 - 557
Target Start/End: Original strand, 31708137 - 31708303
Alignment:
Q  392 ttagtgtatgtttggttatgcaatgacaagaatcaattttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggataa-- 489  Q
    ||||||||||||||||| |||  ||||||||||  ||||||    ||||||||  |||| ||||| |||||  | |||| || ||| ||||||||||       
T  31708137 ttagtgtatgtttggttctgctttgacaagaattgattttgtaa-aattgattaggactaaaagtgagttgctgataaagtggtttgtgtttggatacat 31708235  T
Q  490 tcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaaat 557  Q
    || ||||||| |||||| || | ||||||  ||||| | |||||||||| ||||||||||||||||||    
T  31708236 tcatgtaaaagtgagttgaattataaatttgtgtgttagaatcaattctagaatcaaaagctacaaat 31708303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 600
Target Start/End: Original strand, 41115413 - 41115469
Alignment:
Q  544 caaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttct 600  Q
    |||||||||||||| || ||||||||||||||||||| |  ||||||||||| ||||    
T  41115413 caaaagctacaaattctagcttcaagtagaatcaattctacaagcaaaatcaattct 41115469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 600
Target Start/End: Complemental strand, 35058507 - 35058339
Alignment:
Q  427 attttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgtttggataatcgtgtaaaaatgagttcaagtttaa-attcatgtgt 525  Q
    |||||||||| ||||||||| ||| ||||| |||||||| |||| || ||| ||||||||||      ||||| |||||| ||   ||| |||   ||||    
T  35058507 attttgagtggattgattctaactaaaagtgagttgaagataaagtgctttatgtttggata------taaaagtgagttgaacaataatatttgagtgt 35058414  T
Q  526 aaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttct 600  Q
     |||||||||||| ||||||||||||  || | || ||| ||||||||||||||| | || ||||||||| ||||    
T  35058413 taaaatcaattctagaatcaaaagctcgaatttctagctccaagtagaatcaattcttgaggcaaaatcaattct 35058339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 521 - 595
Target Start/End: Original strand, 25359602 - 25359676
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatca 595  Q
    ||||| |||||||||| | |||| |||| |||||||| ||  |||||||||||||||||| |||| ||| |||||    
T  25359602 tgtgtgaaaatcaattatagaataaaaaactacaaattctaacttcaagtagaatcaattctggaggcagaatca 25359676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 521 - 555
Target Start/End: Original strand, 41596177 - 41596211
Alignment:
Q  521 tgtgtaaaaatcaattcttgaatcaaaagctacaa 555  Q
    ||||||||||||||||||| |||||||||||||||    
T  41596177 tgtgtaaaaatcaattctttaatcaaaagctacaa 41596211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 575
Target Start/End: Original strand, 27266823 - 27266876
Alignment:
Q  522 gtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaat 575  Q
    |||||||||| |||||||||||||  |||||||| | || ||||||||||||||    
T  27266823 gtgtaaaaattaattcttgaatcattagctacaatttctagcttcaagtagaat 27266876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 575
Target Start/End: Complemental strand, 31013161 - 31013021
Alignment:
Q  437 aattgattctgactgaaagttagttgaaggtaaactgatttttgtttggat--aatcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaa 534  Q
    ||||||||| |||| ||||| ||||| || |||| |||||| |||||||||  | || |||| || |||||| || | ||||||  ||||| | ||||||    
T  31013161 aattgattccgactaaaagtgagttgtagataaagtgatttgtgtttggatgcattcatgtacaagtgagttgaattctaaatttgtgtgttagaatcaa 31013062  T
Q  535 ttcttgaatcaaaagctacaaatcctggcttcaagtagaat 575  Q
    |||| || ||||| |||||||||  | | ||||||||||||    
T  31013061 ttctagattcaaaggctacaaatagtaggttcaagtagaat 31013021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 483
Target Start/End: Original strand, 42484399 - 42484488
Alignment:
Q  394 agtgtatgtttggttatgcaatgacaagaatcaattttgagtgaattgattctgactgaaagttagttgaaggtaaactgatttttgttt 483  Q
    |||||||||||  || |||  |||||||||| |||| |||||||||||||||||  | |||||  |||| ||||||| |||||| |||||    
T  42484399 agtgtatgtttacttctgctttgacaagaattaattatgagtgaattgattctggttaaaagtgggttgcaggtaaagtgatttgtgttt 42484488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 639
Target Start/End: Original strand, 44958635 - 44958752
Alignment:
Q  522 gtgtaaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacatt 621  Q
    |||| ||||||| |||| |||||||||||| ||| | || || || ||||||||||| | |||| ||||||||| |||  | ||| | ||| | |||||     
T  44958635 gtgttaaaatcatttctagaatcaaaagctccaatttctagcatcgagtagaatcaactctggaggcaaaatcaattccccctgagagcaaccaaacatg 44958734  T
Q  622 ttagaatcaattctacac 639  Q
    | ||||||||||||||||    
T  44958735 tcagaatcaattctacac 44958752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 527 - 639
Target Start/End: Complemental strand, 54596869 - 54596757
Alignment:
Q  527 aaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacattttaga 626  Q
    ||||||||||||  ||| ||||| ||||||| ||  |||||| || ||||| ||||||| ||| ||||| |||| ||||||| ||| | ||||| | | |    
T  54596869 aaaatcaattctaaaattaaaagttacaaattctaacttcaaataaaatcatttttggaggcagaatcaattctacttgaaaacaaccaaacatgtcata 54596770  T
Q  627 atcaattctacac 639  Q
    ||||||| |||||    
T  54596769 atcaattttacac 54596757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 639
Target Start/End: Original strand, 14077 - 14259
Alignment:
Q  458 agttgaaggtaaactgatttttgtttggataa--tcgtgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacaa 555  Q
    ||||||||||||| |||||| ||||||||||   || ||| ||| |||||| ||   ||||||   ||||||||||||||||| |||||| ||||||  |    
T  14077 agttgaaggtaaagtgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgagtgtaaaaatcaattctagaatcataagcta-ga 14175  T
Q  556 atcctggcttcaagtagaatcaattttggaagcaaaatcatttcttcttgaaatcaatccaacattttagaatcaattctacac 639  Q
     | || ||||||||||||||||||| | |   |||||||| |||| ||| ||   ||||||||| || | ||||||||||||||    
T  14176 ttgctagcttcaagtagaatcaattcttgtgacaaaatcaattctactttaaccaaatccaacacttcaaaatcaattctacac 14259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 580
Target Start/End: Original strand, 220636 - 220691
Alignment:
Q  525 taaaaatcaattcttgaatcaaaagctacaaatcctggcttcaagtagaatcaatt 580  Q
    |||||||||||||| ||||||||| || |||| | | |||||||||||||||||||    
T  220636 taaaaatcaattctagaatcaaaaactgcaaaacatagcttcaagtagaatcaatt 220691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University