View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350-INSERTION-4 (Length: 475)
Name: NF1350-INSERTION-4
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350-INSERTION-4 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 292
Target Start/End: Original strand, 3528061 - 3528346
Alignment:
| Q |
7 |
atgttcaaagctttataataaatttattggtacattgaaccataccataaaaataataagcaaaataccaaagagaaggaccgaaacggtgcacctgatc |
106 |
Q |
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| T |
3528061 |
atgttcaaagctttataataaatttattggtacattgaaccataccataaaaataataagcaaaatactaaagagaaggaccgaaacggtgcacctgatc |
3528160 |
T |
|
| Q |
107 |
taattatttatctatcacacacttcacctgtgtatgtgtctcgtaaatcattgttttgttttgaaatgagattgcctttgattggtagcgacttttcatc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3528161 |
taattatttatctatcacacacttcacctgtgtatgtgtctcgtaaatcattgttttgttttgaaatgagattgcctttgattggtagcaacttttcatc |
3528260 |
T |
|
| Q |
207 |
ccataaccatatgttggccaaagttaattacaactaactaatgtgacaacaaaatgttagaaaatgacaccaatcaaaatcactta |
292 |
Q |
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| T |
3528261 |
ccataaccatatgttggccaaagttaattacaactaactaatgtgacaaaaaaatgttagaaaatgacaccaatcaaaatcactta |
3528346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 334 - 434
Target Start/End: Original strand, 3528345 - 3528445
Alignment:
| Q |
334 |
taaatgattttgatttgtgtcggcttatcatagtaactctacccacattttatttatgtgtaatgtaattgtcatataaaaaatgagatattttaaggag |
433 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3528345 |
taaatgattttgatttgtgtcagctcatcatagtaactctacccacattttatttatgtgtaatgtaattgtcatataaaaaatgagatattttaaggag |
3528444 |
T |
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| Q |
434 |
a |
434 |
Q |
| |
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| |
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| T |
3528445 |
a |
3528445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 110 - 221
Target Start/End: Complemental strand, 1799823 - 1799712
Alignment:
| Q |
110 |
ttatttatctatcacacacttcacctgtgtatgtgtctcgtaaatcattgttttgttttgaaatgagattgcctttgattggtagcgacttttcatccca |
209 |
Q |
| |
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|||||||| ||||||||||||||| |||||| | ||||| |||||||| | ||| || ||||||||||||||||||||||||| || || || ||||||| |
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| T |
1799823 |
ttatttatttatcacacacttcacgtgtgtacgggtctcataaatcatcgctttcttatgaaatgagattgcctttgattggttgcaacgttccatccca |
1799724 |
T |
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| Q |
210 |
taaccatatgtt |
221 |
Q |
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|||||||||| |
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| T |
1799723 |
cgaccatatgtt |
1799712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 377
Target Start/End: Complemental strand, 1797602 - 1797521
Alignment:
| Q |
297 |
tttatgttatatttataacataaatactgaaa-acaaataaatgattttgatttgtgtcggcttatcatagtaactctaccc |
377 |
Q |
| |
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|||||||||||| || || ||||||| ||||| ||||||||| ||||| |||||||| |||||||| |||||||||||| |
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| T |
1797602 |
tttatgttatatataaaaaataaatagtgaaagacaaataaacaattttaatttgtgtaaacttatcatggtaactctaccc |
1797521 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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