View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1350-INSERTION-5 (Length: 608)
Name: NF1350-INSERTION-5
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350-INSERTION-5 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0055 (8 HSPs) |
| | |
|
| [»] scaffold0052 (9 HSPs) |
| | |
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| [»] scaffold0021 (1 HSPs) |
| | |
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| [»] scaffold0515 (1 HSPs) |
| | |
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| [»] scaffold0306 (1 HSPs) |
| | |
|
| [»] scaffold0152 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 8 - 608
Target Start/End: Complemental strand, 37967662 - 37967042
Alignment:
| Q |
8 |
atattgattttctgtctgcaatgtaatatgtccagcagaaccgatgctttccacagacataacatttccagcataatttttcacaacaactgagagc--- |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37967662 |
atattgattttctgtctgcaatgtaatatgtccagcagaaccgatgctttccccagacataacatttccagcataatttttcacaacaactgagagccct |
37967563 |
T |
|
| Q |
105 |
-----------atggccgtggtactaccatccaccgtggtagtgcatggccgttcttagttggtggagcgatttgtgtggttaattccgttaacgaacga |
193 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37967562 |
ttcatgattctatgg--gtggtactaccatccaccgtggtagtgcatggccgttcttagttggtggagcgatttgtgtggttaattccgttaacgaacga |
37967465 |
T |
|
| Q |
194 |
gacctcagcttgctaaataactatgtggaggtaaccctccacgaccagcttcttagagggactatggccacttaggccacggaagtttgaggcaataaca |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37967464 |
gacctcagcttgctaaataactatgtggaggtaaccctccacagccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataaca |
37967365 |
T |
|
| Q |
294 |
tctgccaacataatctgcgtcgaactcaatctgggcagaagaaagacatttctgattccacacagtccatttcggttctgccatatgcccgatatcatca |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37967364 |
tctgccaacataatctgcgtcgaactcaatctgggcagaagaaagacatttctgattccacacagtccatttcggttctgccatatgcccgatatcatca |
37967265 |
T |
|
| Q |
394 |
tcaaaacacaagtaatataatcacttcttgatcatgggtacacacatccatcaatacagcaccaacctagtcaaaatgttgcagacggggctgcaaaatg |
493 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
37967264 |
tcaaaacacaagta--ataatcacttcatgatcatgggtacacacatccatcaatacagcaccaacctagtcaaaatgcttcagacggggctgcaaaatg |
37967167 |
T |
|
| Q |
494 |
tgtgacaaacccgcagtactccagtattcagt-ctggtatcacattggaaaaataagtgccaatcatg--------ctccgccctgca-gaaacatttag |
583 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | || |||| || ||||||||||| |
|
|
| T |
37967166 |
tgcgacaaacccgcagtactccagtattcagtactggtatcacattggaaaaataagtgccaatcatgcccccccccccccccctacaggaaacatttag |
37967067 |
T |
|
| Q |
584 |
taacacggcggtttataaaatcttc |
608 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
37967066 |
taacacggcggtttataaaatcttc |
37967042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055 (Bit Score: 141; Significance: 1e-73; HSPs: 8)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 129 - 293
Target Start/End: Complemental strand, 41685 - 41521
Alignment:
| Q |
129 |
gtggtagtgcatggccgttcttagttggtggagcgatttgtgtggttaattccgttaacgaacgagacctcagcttgctaaataactatgtggaggtaac |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
41685 |
gtggtggtgcatggccgttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaac |
41586 |
T |
|
| Q |
229 |
cctccacgaccagcttcttagagggactatggccacttaggccacggaagtttgaggcaataaca |
293 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41585 |
cctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataaca |
41521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 129 - 293
Target Start/End: Complemental strand, 66556 - 66392
Alignment:
| Q |
129 |
gtggtagtgcatggccgttcttagttggtggagcgatttgtgtggttaattccgttaacgaacgagacctcagcttgctaaataactatgtggaggtaac |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
66556 |
gtggtggtgcatggccgttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaac |
66457 |
T |
|
| Q |
229 |
cctccacgaccagcttcttagagggactatggccacttaggccacggaagtttgaggcaataaca |
293 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
66456 |
cctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataaca |
66392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 129 - 293
Target Start/End: Complemental strand, 69388 - 69224
Alignment:
| Q |
129 |
gtggtagtgcatggccgttcttagttggtggagcgatttgtgtggttaattccgttaacgaacgagacctcagcttgctaaataactatgtggaggtaac |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
69388 |
gtggtggtgcatggccgttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaac |
69289 |
T |
|
| Q |
229 |
cctccacgaccagcttcttagagggactatggccacttaggccacggaagtttgaggcaataaca |
293 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
69288 |
cctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataaca |
69224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 129 - 293
Target Start/End: Original strand, 71700 - 71864
Alignment:
| Q |
129 |
gtggtagtgcatggccgttcttagttggtggagcgatttgtgtggttaattccgttaacgaacgagacctcagcttgctaaataactatgtggaggtaac |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
71700 |
gtggtggtgcatggccgttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaac |
71799 |
T |
|
| Q |
229 |
cctccacgaccagcttcttagagggactatggccacttaggccacggaagtttgaggcaataaca |
293 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
71800 |
cctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataaca |
71864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #5
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 129 - 293
Target Start/End: Complemental strand, 79934 - 79770
Alignment:
| Q |
129 |
gtggtagtgcatggccgttcttagttggtggagcgatttgtgtggttaattccgttaacgaacgagacctcagcttgctaaataactatgtggaggtaac |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
79934 |
gtggtggtgcatggccgttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaac |
79835 |
T |
|
| Q |
229 |
cctccacgaccagcttcttagagggactatggccacttaggccacggaagtttgaggcaataaca |
293 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
79834 |
cctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataaca |
79770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #6
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 129 - 293
Target Start/End: Complemental strand, 50933 - 50769
Alignment:
| Q |
129 |
gtggtagtgcatggccgttcttagttggtggagcgatttgtgtggttaattccgttaacgaacgagacctcagcttgctaaataactatgtggaggtaac |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
50933 |
gtggtggtgcatggccgttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaac |
50834 |
T |
|
| Q |
229 |
cctccacgaccagcttcttagagggactatggccacttaggccacggaagtttgaggcaataaca |
293 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
50833 |
cctccacggccagcttcttagagggactatggccgcttaggccatggaagtttgaggcaataaca |
50769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #7
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 129 - 293
Target Start/End: Complemental strand, 32371 - 32207
Alignment:
| Q |
129 |
gtggtagtgcatggccgttcttagttggtggagcgatttgtgtggttaattccgttaacgaacgagacctcagcttgctaaataactatgtggaggtaac |
228 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
32371 |
gtggtggtgcgtggccgttcttagttggtggagcgatttgtctggttaattccgttaatgaacgagacctcagcctgctaaatagctatgtggaggtaac |
32272 |
T |
|
| Q |
229 |
cctccacgaccagcttcttagagggactatggccacttaggccacggaagtttgaggcaataaca |
293 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32271 |
cctccacggccagcttcttagaaggactatggccgcttaggccacggaagtttgaggcaataaca |
32207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #8
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 129 - 252
Target Start/End: Original strand, 4748 - 4871
Alignment:
| Q |
129 |
gtggtagtgcatggccgttcttagttggtggagcgatttgtgtggttaattccgttaacgaacgagacctcagcttgctaaataactatgtggaggtaac |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
4748 |
gtggtggtgcatggccgttcttagttggtggagcgatttgtctagttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaac |
4847 |
T |
|
| Q |
229 |
cctccacgaccagcttcttagagg |
252 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
4848 |
cctccacggccagcttcttagagg |
4871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 141; Significance: 1e-73; HSPs: 9)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 129 - 293
Target Start/End: Complemental strand, 6288 - 6124
Alignment:
| Q |
129 |
gtggtagtgcatggccgttcttagttggtggagcgatttgtgtggttaattccgttaacgaacgagacctcagcttgctaaataactatgtggaggtaac |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
6288 |
gtggtggtgcatggccgttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaac |
6189 |
T |
|
| Q |
229 |
cctccacgaccagcttcttagagggactatggccacttaggccacggaagtttgaggcaataaca |
293 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6188 |
cctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataaca |
6124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 129 - 293
Target Start/End: Complemental strand, 27320 - 27156
Alignment:
| Q |
129 |
gtggtagtgcatggccgttcttagttggtggagcgatttgtgtggttaattccgttaacgaacgagacctcagcttgctaaataactatgtggaggtaac |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
27320 |
gtggtggtgcatggccgttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaac |
27221 |
T |
|
| Q |
229 |
cctccacgaccagcttcttagagggactatggccacttaggccacggaagtttgaggcaataaca |
293 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27220 |
cctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataaca |
27156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 129 - 293
Target Start/End: Original strand, 35372 - 35536
Alignment:
| Q |
129 |
gtggtagtgcatggccgttcttagttggtggagcgatttgtgtggttaattccgttaacgaacgagacctcagcttgctaaataactatgtggaggtaac |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
35372 |
gtggtggtgcatggccgttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaac |
35471 |
T |
|
| Q |
229 |
cctccacgaccagcttcttagagggactatggccacttaggccacggaagtttgaggcaataaca |
293 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35472 |
cctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataaca |
35536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 129 - 293
Target Start/End: Complemental strand, 47840 - 47676
Alignment:
| Q |
129 |
gtggtagtgcatggccgttcttagttggtggagcgatttgtgtggttaattccgttaacgaacgagacctcagcttgctaaataactatgtggaggtaac |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
47840 |
gtggtggtgcatggccgttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaac |
47741 |
T |
|
| Q |
229 |
cctccacgaccagcttcttagagggactatggccacttaggccacggaagtttgaggcaataaca |
293 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47740 |
cctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataaca |
47676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #5
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 129 - 293
Target Start/End: Complemental strand, 25458 - 25294
Alignment:
| Q |
129 |
gtggtagtgcatggccgttcttagttggtggagcgatttgtgtggttaattccgttaacgaacgagacctcagcttgctaaataactatgtggaggtaac |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
25458 |
gtggtggtgcatggccgttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaac |
25359 |
T |
|
| Q |
229 |
cctccacgaccagcttcttagagggactatggccacttaggccacggaagtttgaggcaataaca |
293 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
25358 |
cctccacggccagcttcttagagggactatggccgcttaggccatggaagtttgaggcaataaca |
25294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #6
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 129 - 293
Target Start/End: Original strand, 63694 - 63858
Alignment:
| Q |
129 |
gtggtagtgcatggccgttcttagttggtggagcgatttgtgtggttaattccgttaacgaacgagacctcagcttgctaaataactatgtggaggtaac |
228 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
63694 |
gtggtggtgcgtggccgttcttagttggtggagcgatttgtctggttaattccgttaatgaacgagacctcagcctgctaaatagctatgtggaggtaac |
63793 |
T |
|
| Q |
229 |
cctccacgaccagcttcttagagggactatggccacttaggccacggaagtttgaggcaataaca |
293 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
63794 |
cctccacggccagcttcttagaaggactatggccgcttaggccacggaagtttgaggcaataaca |
63858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #7
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 129 - 252
Target Start/End: Complemental strand, 79787 - 79664
Alignment:
| Q |
129 |
gtggtagtgcatggccgttcttagttggtggagcgatttgtgtggttaattccgttaacgaacgagacctcagcttgctaaataactatgtggaggtaac |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
79787 |
gtggtggtgcatggccgttcttagttggtggagcgatttgtctagttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaac |
79688 |
T |
|
| Q |
229 |
cctccacgaccagcttcttagagg |
252 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
79687 |
cctccacggccagcttcttagagg |
79664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #8
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 188 - 293
Target Start/End: Original strand, 30577 - 30682
Alignment:
| Q |
188 |
gaacgagacctcagcttgctaaataactatgtggaggtaaccctccacgaccagcttcttagagggactatggccacttaggccacggaagtttgaggca |
287 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
30577 |
gaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccatggaagtttgaggca |
30676 |
T |
|
| Q |
288 |
ataaca |
293 |
Q |
| |
|
|||||| |
|
|
| T |
30677 |
ataaca |
30682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #9
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 198 - 293
Target Start/End: Complemental strand, 42351 - 42256
Alignment:
| Q |
198 |
tcagcttgctaaataactatgtggaggtaaccctccacgaccagcttcttagagggactatggccacttaggccacggaagtttgaggcaataaca |
293 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42351 |
tcagcctgctaaatagctatgtggaggtaaccctccacggccagctttttagagggactatggccgcttaggccacggaagtttgaggcaataaca |
42256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 129 - 293
Target Start/End: Complemental strand, 46102 - 45938
Alignment:
| Q |
129 |
gtggtagtgcatggccgttcttagttggtggagcgatttgtgtggttaattccgttaacgaacgagacctcagcttgctaaataactatgtggaggtaac |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
46102 |
gtggtggtgcatggccgttcttagttggtggagcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaac |
46003 |
T |
|
| Q |
229 |
cctccacgaccagcttcttagagggactatggccacttaggccacggaagtttgaggcaataaca |
293 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46002 |
cctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataaca |
45938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 204 - 293
Target Start/End: Original strand, 14379965 - 14380054
Alignment:
| Q |
204 |
tgctaaataactatgtggaggtaaccctccacgaccagcttcttagagggactatggccacttaggccacggaagtttgaggcaataaca |
293 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
14379965 |
tgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttagaccacggaagtttgaggcaataaca |
14380054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0515 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0515
Description:
Target: scaffold0515; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 7550 - 7618
Alignment:
| Q |
225 |
taaccctccacgaccagcttcttagagggactatggccacttaggccacggaagtttgaggcaataaca |
293 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
7550 |
taaccctccacggccagcttcttagagggattatggccgcttaggccacggaagtttaaggcaataaca |
7618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0306 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0306
Description:
Target: scaffold0306; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 7560 - 7628
Alignment:
| Q |
225 |
taaccctccacgaccagcttcttagagggactatggccacttaggccacggaagtttgaggcaataaca |
293 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
7560 |
taaccctccacggccagcttcttagagggattatggccgcttaggccacggaagtttaaggcaataaca |
7628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 25171 - 25239
Alignment:
| Q |
225 |
taaccctccacgaccagcttcttagagggactatggccacttaggccacggaagtttgaggcaataaca |
293 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
25171 |
taaccctccacggccagcttcttagagggattatggccgcttaggccacggaagtttaaggcaataaca |
25239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 13643694 - 13643633
Alignment:
| Q |
151 |
agttggtggagcgatttgtgtggttaattccgttaacgaacgagacctcagcttgctaaata |
212 |
Q |
| |
|
|||||||||||| |||||| ||| | ||| ||||||| ||| ||||||||||||| |||||| |
|
|
| T |
13643694 |
agttggtggagcaatttgtctggattatttcgttaacaaacaagacctcagcttgttaaata |
13643633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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