View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1350-INSERTION-8 (Length: 480)
Name: NF1350-INSERTION-8
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350-INSERTION-8 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 66 - 480
Target Start/End: Original strand, 40079777 - 40080187
Alignment:
| Q |
66 |
atgatgtacacatgtatgtttgcagcataatgtgtgaataaaaagcaacctatgtgagacnnnnnnngaaacttaattaactaatgtggtaaaattaaac |
165 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40079777 |
atgatgtacacatgtatgtttgcaacagaatgtgtgaataaaaagtaacctatgtgagacaaaaaaagaaacttaattaactaatgtggtaaaattaaac |
40079876 |
T |
|
| Q |
166 |
agctgcgggatgtagttttgactaaaagatttgatctaattctgtacaacacaaatgtttcaaaagaattatgatcaactgcatagagttagcataacat |
265 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40079877 |
agctgcgggatgtagttttggctaaaagatttgatctaattatgtacagcacatatgtttcaaaagaattatgatcaactgcatagagttagcataacat |
40079976 |
T |
|
| Q |
266 |
ctatacttgataattatgattcatgtgatccagggaggaattttgctaggaccttctggtattggacgcaacaaaactttcatgcacacggttttccctt |
365 |
Q |
| |
|
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40079977 |
ctata----atgattatgattcatgtgattcagggaggaattttgctaggaccttctggtattggacgcaacaaaactttcatgcacacggttttccctt |
40080072 |
T |
|
| Q |
366 |
catggagcactcccatacttgaatcagtagctagcattggccttctcttctatctcttcctcgtaggtcttgagctcgacctccgcaccattaaccgcag |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40080073 |
catggagcactcccatacttgaatcagtagctagcattggccttctcttctatctcttcctcgtaggtcttgagctcgacctccgcaccattaaccgcag |
40080172 |
T |
|
| Q |
466 |
tggtaagcgagcttt |
480 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
40080173 |
tggtaagcgagcttt |
40080187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 40079684 - 40079758
Alignment:
| Q |
8 |
atgagaaatgaatacatgtaacaaatgttctcaacatgatttatatcacgtcaataacatgatgtacacatgtat |
82 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40079684 |
atgagaaatgaatacatgtaacaaatgttctcaacatgatttatatcacgtcaataacatgatgtacacatgtat |
40079758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University