View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350-Insertion-11 (Length: 381)
Name: NF1350-Insertion-11
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350-Insertion-11 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 361
Target Start/End: Complemental strand, 4760972 - 4760619
Alignment:
| Q |
8 |
gttgaaagtgttaaggcaacaagtgatgtaaactctccaatatctggtgagattgttgaagttaatgataagctcactggaaaacctggcctggtaattc |
107 |
Q |
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| T |
4760972 |
gttgaaagtgttaaggcaacaagtgatgtaaactctccaatatctggtgagattgttgaagttaatgataagctcactggaaaacctggcctggtaattc |
4760873 |
T |
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| Q |
108 |
attcattcactcactcactctcatttttaggacaagaaggttaattacttaggaatgacttaagtacttattgaatataagagcttatgaataagttatt |
207 |
Q |
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| T |
4760872 |
attcattcactcactcactctcatttttaggacaagaaggttaattacttaggaatgacttaagtacttattgaatataagagcttatgaataagttatt |
4760773 |
T |
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| Q |
208 |
ttaatttacaatcaaatagagaataagaaactttgcaaagctaaagagataagtgaactagtggtgtatttttatgaaaataagctgaaaacaacttacc |
307 |
Q |
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| T |
4760772 |
ttaatttacaatcaaatagagaataagaaactttgcaaagctaaagagataagtgaactagtggtgtatgtttatgaaaataagctgaaaacaacttacc |
4760673 |
T |
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| Q |
308 |
tcaaatagttacacaaatgtttatgtcatgacttatgaaataagtcaacattta |
361 |
Q |
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| T |
4760672 |
tcaaatagttacacagatgtttatgtcatgacttatgaaataagtcaacattta |
4760619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 306
Target Start/End: Complemental strand, 10272469 - 10272441
Alignment:
| Q |
278 |
tttatgaaaataagctgaaaacaacttac |
306 |
Q |
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| T |
10272469 |
tttatgaaaataagctgaaaacaacttac |
10272441 |
T |
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