View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350-Insertion-13 (Length: 700)
Name: NF1350-Insertion-13
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350-Insertion-13 |
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Alignment Details
Target: chr4 (Bit Score: 641; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 8 - 699
Target Start/End: Complemental strand, 39587169 - 39586470
Alignment:
| Q |
8 |
cacttcaccgtaccttccacactctctcacagaaatacggtcaagtcttttccctacggttcggttcacgttttgtcgtcgttgtttcatcaccttcggt |
107 |
Q |
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| T |
39587169 |
cacttcaccgtaccttccacactctctcacaaaaatacggtcaagtcttttccctacggttcggttcacgttttgtcgtcgttgtttcatcaccttctgt |
39587070 |
T |
|
| Q |
108 |
cgtacacgaatgtttcacaaaaaatgacactattttagcaaaccggccacctcttctggcaggcaaacacatcggatacaactacaccgcggtaaccgtt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39587069 |
cgtacacgaatgtttcacaaaaaatgacactattttagcaaaccggccacctcttctggcaggcaaacacatcggatacaactacaccgcggtaaccgtt |
39586970 |
T |
|
| Q |
208 |
gctccttatggcgatcactggcgtaacgtccgtcgtataatctcccttgacgttctctcaacacaccgtttaaactcatttttacgtattagaaaaaacg |
307 |
Q |
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| T |
39586969 |
gctccttatggcgatcactggcgtaacgtccgtcgtataatctcccttgacgttctctcaacacaccgtttaaactcatttttacgtattagaaaaaacg |
39586870 |
T |
|
| Q |
308 |
aaatcatgaaactcatgcaagccctagctcgtggttctagtt------ctagcgacggttttgcgagagtggagttgaaaacaaagctttcggagatgac |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39586869 |
aaatcatgaaactcatgcaagccctagctcgtggttctagttctagttctagcgacggttttgtgagagtggagttgaaaacaaagctttcggagatgac |
39586770 |
T |
|
| Q |
402 |
ttttaacacgataatgagaatgatatctggaaagagatattatggtgaggactgtgatgtgagtgatgaagaagaagctaagggatttagggagatgatt |
501 |
Q |
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| T |
39586769 |
ttttaacacgataatgagaatgatatctggaaagagatattatggtgaggattgtgatgtgagtgatgaagaagaagctaagggatttagggagatgatt |
39586670 |
T |
|
| Q |
502 |
aaggagatggtatcgttgggtggttcgagtaatcctggtgaatttgttgggattttgaggtggttcgattttggtggttatgaaaagaagttgaaaagga |
601 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39586669 |
aaggagatggtatcgttgggtggttcgagtaatcctggtgaatttgttgggattttgaggtggtttgattttggtggttatgaaaagaagttgaaaagga |
39586570 |
T |
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| Q |
602 |
ttgcaagaagatttgatgggtttttgc-aggtttgattgatgagcataggaggaagaaggagaa-gggaataacatgattgatcatctcttgaacttgca |
699 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39586569 |
ttgcaagaagatttgatgggtttttgcaaggtttgattgatgagcataggaggaagaaggagaaggggaataacatgattgatcatctcttgaacttgca |
39586470 |
T |
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