View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1350-Insertion-14 (Length: 356)

Name: NF1350-Insertion-14
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1350-Insertion-14
NF1350-Insertion-14
[»] chr4 (9 HSPs)
chr4 (7-356)||(2685354-2685701)
chr4 (18-125)||(2693884-2693992)
chr4 (130-212)||(42874117-42874199)
chr4 (176-241)||(37933616-37933681)
chr4 (165-216)||(8714290-8714341)
chr4 (150-213)||(24489095-24489158)
chr4 (103-216)||(49804497-49804613)
chr4 (102-210)||(20004291-20004399)
chr4 (122-182)||(23404614-23404674)
[»] chr8 (11 HSPs)
chr8 (99-216)||(23038896-23039013)
chr8 (127-212)||(38498756-38498841)
chr8 (121-216)||(8035209-8035304)
chr8 (127-241)||(8007453-8007567)
chr8 (128-237)||(7992431-7992540)
chr8 (173-241)||(9717848-9717915)
chr8 (161-212)||(1170801-1170852)
chr8 (119-241)||(4516125-4516247)
chr8 (98-182)||(38640072-38640156)
chr8 (177-219)||(8021195-8021237)
chr8 (177-237)||(12838952-12839012)
[»] chr3 (9 HSPs)
chr3 (127-241)||(32933373-32933487)
chr3 (147-237)||(23884328-23884418)
chr3 (127-239)||(34804633-34804745)
chr3 (131-210)||(3942230-3942309)
chr3 (131-218)||(36640052-36640139)
chr3 (102-173)||(36521122-36521193)
chr3 (145-212)||(41538673-41538740)
chr3 (134-199)||(49757818-49757883)
chr3 (129-237)||(20002257-20002365)
[»] chr2 (11 HSPs)
chr2 (119-216)||(33314504-33314601)
chr2 (119-237)||(17034112-17034230)
chr2 (119-237)||(17077840-17077958)
chr2 (119-237)||(17088799-17088917)
chr2 (101-219)||(41164431-41164549)
chr2 (145-214)||(3048279-3048348)
chr2 (100-236)||(37442465-37442602)
chr2 (127-196)||(15232027-15232096)
chr2 (102-194)||(1605453-1605545)
chr2 (145-237)||(17251490-17251582)
chr2 (145-237)||(28852369-28852461)
[»] scaffold0457 (1 HSPs)
scaffold0457 (115-219)||(2205-2309)
[»] chr7 (13 HSPs)
chr7 (99-199)||(25290119-25290219)
chr7 (146-237)||(18891748-18891839)
chr7 (115-210)||(33293572-33293667)
chr7 (157-216)||(19736444-19736503)
chr7 (146-233)||(42992941-42993028)
chr7 (127-241)||(25545999-25546113)
chr7 (152-234)||(7606546-7606628)
chr7 (99-233)||(18878083-18878217)
chr7 (101-193)||(42813976-42814068)
chr7 (144-219)||(35217524-35217599)
chr7 (145-199)||(7371721-7371775)
chr7 (101-237)||(45639796-45639929)
chr7 (150-237)||(4897970-4898055)
[»] chr1 (6 HSPs)
chr1 (119-204)||(41189262-41189347)
chr1 (119-216)||(9529535-9529631)
chr1 (152-217)||(35793988-35794053)
chr1 (133-216)||(5613240-5613323)
chr1 (127-216)||(17633454-17633543)
chr1 (102-167)||(299704-299769)
[»] chr5 (7 HSPs)
chr5 (133-210)||(23936618-23936695)
chr5 (122-219)||(26014910-26015007)
chr5 (130-241)||(8033766-8033877)
chr5 (121-210)||(28462802-28462891)
chr5 (150-213)||(31763879-31763942)
chr5 (151-239)||(35677461-35677549)
chr5 (161-212)||(31746580-31746631)
[»] chr6 (4 HSPs)
chr6 (146-218)||(14702864-14702936)
chr6 (146-218)||(14703149-14703221)
chr6 (100-238)||(32362159-32362297)
chr6 (154-219)||(10128521-10128586)
[»] scaffold0027 (1 HSPs)
scaffold0027 (145-195)||(137349-137399)


Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 7 - 356
Target Start/End: Original strand, 2685354 - 2685701
Alignment:
Q  7 aagtttaaagaaactaatgcaatttataacttgtagtaattgtcataaaattatagaatactacaaacttttcggcgattgtttagaaacctaattattt 106  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2685354 aagtttaaagaaactaatgcaatttataacttgtagtatttgtcataaaattatagaatactacaaacttttcggcgattgtttagaaacctaattattt 2685453  T
Q  107 gatcgattataaatacatactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgc 206  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |    |    
T  2685454 gatcgattatacatacatactacataaatgtaatacgagttaaaatttacgattactttgtatttctaaaatatataatatttattctcacatga----c 2685549  T
Q  207 atgactcaaagagctatattcaatacatgaaaaatcatcgagatatga-nnnnnnnnnnnnngcaaaatatatatgagtggtttctttatttagttgatg 305  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||| |||||||||||||||||||    
T  2685550 atgattcaaagagctatattcaatacatgaaaaatcatcgagatatgattttatttttttttccaaaatatatatgagtgatttctttatttagttgatg 2685649  T
Q  306 atgttgtttgcgatt-aaaagcatgacttcataaatcatatttaattcatga 356  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2685650 atgttgtttgcgattgaaaagcatgacttcataaatcatatttaattcatga 2685701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 2693992 - 2693884
Alignment:
Q  18 aactaatgcaatttataacttgtagtaattgtcataaaattatagaatactacaaacttttcggcgattgtttag-aaacctaattatttgatcgattat 116  Q
    |||||||| ||||| |||||  | ||| |||||||||||||||||||||||||||| ||||  | |||| ||||| ||||||||||||||||||||||||    
T  2693992 aactaatgtaatttgtaactcatcgtatttgtcataaaattatagaatactacaaagttttatgtgattatttagaaaacctaattatttgatcgattat 2693893  T
Q  117 aaatacata 125  Q
    |||||||||    
T  2693892 aaatacata 2693884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 42874199 - 42874117
Alignment:
Q  130 ataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgact 212  Q
    |||||||||| | | ||||||||||||||| |||||||||||||||  ||||| |||||||||||||||||| || |||||||    
T  42874199 ataaatgtaacaagggttaaaatttacaatcactttgtatttctaacctatataatatttattctcacataatatacatgact 42874117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 37933616 - 37933681
Alignment:
Q  176 aatatatgatatttattctcacataacatgcatgactcaaagagctatattcaatacatgaaaaat 241  Q
    ||||||| |||||| ||||||||| ||||||||||||||||||| | ||||  ||| |||||||||    
T  37933616 aatatataatatttgttctcacatgacatgcatgactcaaagagttgtatttcatatatgaaaaat 37933681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 8714341 - 8714290
Alignment:
Q  165 tgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaa 216  Q
    ||||||||||| |||||| |||||||||||||||| || ||||||| |||||    
T  8714341 tgtatttctaacatatataatatttattctcacatgacttgcatgattcaaa 8714290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 24489095 - 24489158
Alignment:
Q  150 aatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactc 213  Q
    |||||||| ||||||||||||| |||  ||||| |||||  |||||||||||||||||| ||||    
T  24489095 aatttacacttactttgtatttataacctatataatattctttctcacataacatgcattactc 24489158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 216
Target Start/End: Original strand, 49804497 - 49804613
Alignment:
Q  103 atttgatcgattataaatacatactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatat---atgatatttattctcacat 199  Q
    ||||||| ||| ||| ||| ||| || |||||||||| |   ||| |||||||| |||||||||||||||||| ||||   || ||||| |||||||||     
T  49804497 atttgatagataatagatatataatatataaatgtaaaagaggttgaaatttacgattactttgtatttctaacatatataataatattcattctcacac 49804596  T
Q  200 aacatgcatgactcaaa 216  Q
    ||| ||||||| |||||    
T  49804597 aacttgcatgaatcaaa 49804613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 210
Target Start/End: Complemental strand, 20004399 - 20004291
Alignment:
Q  102 tatttgatcgattataaatacatactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataa 201  Q
    |||||||| ||| | | ||||||| | |||||||||||||  ||||||||||||  || | ||| |||||| || | |||| ||||| ||| ||||||||    
T  20004399 tatttgatagataacagatacataatgcataaatgtaatagaagttaaaatttatgatcaatttatatttcgaacacatataatattcattttcacataa 20004300  T
Q  202 catgcatga 210  Q
    ||| |||||    
T  20004299 catacatga 20004291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 23404614 - 23404674
Alignment:
Q  122 catactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatat 182  Q
    |||| ||||||||||||| | |||||| |||||||||| |||||| ||||| || ||||||    
T  23404614 cataatacataaatgtaaaaggagttataatttacaatcactttgaatttcgaacatatat 23404674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 216
Target Start/End: Complemental strand, 23039013 - 23038896
Alignment:
Q  99 aattatttgatcgattataaatacatactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcaca 198  Q
    ||||||||||| ||| ||| ||  ||| |||||| |||||||| ||||||||||||||||| || |||||||||||| |||| | ||||| |||||||||    
T  23039013 aattatttgatagataatagatgtataatacatatatgtaataggagttaaaatttacaatcacgttgtatttctaacatatgtaatattcattctcaca 23038914  T
Q  199 taacatgcatgactcaaa 216  Q
    ||||||| ||||||||||    
T  23038913 taacatgtatgactcaaa 23038896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 212
Target Start/End: Original strand, 38498756 - 38498841
Alignment:
Q  127 tacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgact 212  Q
    ||||||||||||||| ||||| ||||||||| |  ||||||||||| ||||||||| ||||| | |||||||||||||| ||||||    
T  38498756 tacataaatgtaatatgagttgaaatttacattcgctttgtatttcaaaaatatataatattcaatctcacataacatgtatgact 38498841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 121 - 216
Target Start/End: Original strand, 8035209 - 8035304
Alignment:
Q  121 acatactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaa 216  Q
    ||||| ||||||| ||||||| | ||||||||| | | |  ||||||| |||||| |||||| |||||||||||||||||||||||||| ||||||    
T  8035209 acataatacataagtgtaataagggttaaaattgagactatctttgtacttctaacatatataatatttattctcacataacatgcatggctcaaa 8035304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 8007453 - 8007567
Alignment:
Q  127 tacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaagagctatatt 226  Q
    ||||||||||||||| | ||||||||| | |||  | || || |||||| |||||| |||||||||||||||||| ||| ||||||||||||    ||||    
T  8007453 tacataaatgtaataagggttaaaattgagaatgtcgttctacttctaacatatataatatttattctcacataatatggatgactcaaagatacttatt 8007552  T
Q  227 caatacatgaaaaat 241  Q
     ||||||||||||||    
T  8007553 taatacatgaaaaat 8007567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 7992431 - 7992540
Alignment:
Q  128 acataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaagagctatattc 227  Q
    |||||||||||||| | |||||| |||| |||  ||||||| |||||| |||||| ||||||||| | |||||||| | |||| ||||||||   ||||     
T  7992431 acataaatgtaataagcgttaaattttagaatgtctttgtacttctaacatatataatatttattattacataacacggatgattcaaagagtcttattt 7992530  T
Q  228 aatacatgaa 237  Q
    ||||||||||    
T  7992531 aatacatgaa 7992540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 9717915 - 9717848
Alignment:
Q  173 taaaatatatgatatttattctcacataacatgcatgactcaaagagctatattcaatacatgaaaaat 241  Q
    |||||||||| ||||||||| ||||||||||| |||||||  |||| ||||||| ||||||||||||||    
T  9717915 taaaatatataatatttatt-tcacataacatacatgacttcaagatctatatttaatacatgaaaaat 9717848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 1170801 - 1170852
Alignment:
Q  161 actttgtatttctaaaatatatgatatttattctcacataacatgcatgact 212  Q
    ||||||||||||||| |||||| ||||||||| |||||| ||||||||||||    
T  1170801 actttgtatttctaacatatataatatttattttcacatgacatgcatgact 1170852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 241
Target Start/End: Complemental strand, 4516247 - 4516125
Alignment:
Q  119 atacatactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaaga 218  Q
    |||||||  |||||||| |||||   |||||| |||||||| ||||   |||| ||| ||||||| ||||||||||||||||  || ||||| |||||||    
T  4516247 atacataaaacataaatttaatagaggttaaactttacaatcacttccaatttttaacatatatgttatttattctcacataggattcatgattcaaaga 4516148  T
Q  219 gctatattcaatacatgaaaaat 241  Q
    |  ||||| ||||| ||||||||    
T  4516147 gacatatttaatacgtgaaaaat 4516125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 38640072 - 38640156
Alignment:
Q  98 taattatttgatcgattataaatacatactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatat 182  Q
    |||||||||| | ||| ||| ||||||| ||||||| |||||||   ||||||||||||||| || ||||||||| || ||||||    
T  38640072 taattatttggtagataatatatacataatacataattgtaatagaggttaaaatttacaatcaccttgtatttccaatatatat 38640156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 8021195 - 8021237
Alignment:
Q  177 atatatgatatttattctcacataacatgcatgactcaaagag 219  Q
    |||||| |||||||||||||||||||||||||| || ||||||    
T  8021195 atatataatatttattctcacataacatgcatggcttaaagag 8021237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 12838952 - 12839012
Alignment:
Q  177 atatatgatatttattctcacataacatgcatgactcaaagagctatattcaatacatgaa 237  Q
    |||||| |||||||||||||||| |||||  |||||||||||   ||||| ||||||||||    
T  12838952 atatataatatttattctcacatgacatgtgtgactcaaagactcatatttaatacatgaa 12839012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 32933487 - 32933373
Alignment:
Q  127 tacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaagagctatatt 226  Q
    ||||||||||||||| | ||||||||||| ||||||||||||||||||| |||||| ||||||||| |||||| | |||||||||| ||| |   |||||    
T  32933487 tacataaatgtaatatgcgttaaaatttataattactttgtatttctaacatatataatatttattttcacatgatatgcatgacttaaaaactcatatt 32933388  T
Q  227 caatacatgaaaaat 241  Q
     |||| |||||||||    
T  32933387 taatatatgaaaaat 32933373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 147 - 237
Target Start/End: Complemental strand, 23884418 - 23884328
Alignment:
Q  147 taaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaagagctatattcaatacatgaa 237  Q
    ||||||||||||| ||||||||||||||| |||||| ||||||||||| | || |||||||||| | | |||| |||||| ||||||||||    
T  23884418 taaaatttacaatcactttgtatttctaacatatataatatttattcttatatgacatgcatgatttatagagttatatttaatacatgaa 23884328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 239
Target Start/End: Original strand, 34804633 - 34804745
Alignment:
Q  127 tacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaagagctatatt 226  Q
    ||||||||||||| |   |||||||||||| || ||||| ||||||||| |||||| |||||| ||||||||| |||||||||||| || |||   ||||    
T  34804633 tacataaatgtaacaacggttaaaatttacgatcactttatatttctaacatatataatattttttctcacatgacatgcatgactgaaggagacttatt 34804732  T
Q  227 caatacatgaaaa 239  Q
     ||||||||||||    
T  34804733 taatacatgaaaa 34804745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 3942309 - 3942230
Alignment:
Q  131 taaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatga 210  Q
    ||||||||||| || ||||||||   |||  |||| ||||||||| |||||| |||||||||||||||| ||||||||||    
T  3942309 taaatgtaataagatttaaaattgggaatctctttctatttctaacatatataatatttattctcacatgacatgcatga 3942230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 218
Target Start/End: Complemental strand, 36640139 - 36640052
Alignment:
Q  131 taaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaaga 218  Q
    ||||||||||| | |||||||||||||||  ||||||||||||    ||||||||||||||||||| || | ||| ||||| ||||||    
T  36640139 taaatgtaataggcgttaaaatttacaatcgctttgtatttcttttgtatatgatatttattctcatatgatatgtatgacacaaaga 36640052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 36521193 - 36521122
Alignment:
Q  102 tatttgatcgattataaatacatactacataaatgtaatacgagttaaaatttacaattactttgtatttct 173  Q
    |||||||| ||| ||||||||||| ||||||||| ||||| |   |||||| |||||| |||||||||||||    
T  36521193 tatttgatagataataaatacataatacataaatataatatgcaataaaatatacaatcactttgtatttct 36521122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 41538740 - 41538673
Alignment:
Q  145 gttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgact 212  Q
    ||||||||||||||| |  |||||||||||| |||||| ||||||||||| |  | ||||||||||||    
T  41538740 gttaaaatttacaatcaaattgtatttctaacatatataatatttattctaatgtgacatgcatgact 41538673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 49757883 - 49757818
Alignment:
Q  134 atgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacat 199  Q
    |||||||| | |||||| |||| |||  |||| ||||||||| |||||| ||||||||||||||||    
T  49757883 atgtaataagtgttaaagtttagaatctctttatatttctaacatatataatatttattctcacat 49757818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 237
Target Start/End: Complemental strand, 20002365 - 20002257
Alignment:
Q  129 cataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaagagctatattca 228  Q
    ||||||||||||| | ||| ||| ||| |||   ||||| ||||||| ||||||  ||||||||||||||| |||  ||||||||||| ||   |||| |    
T  20002365 cataaatgtaataagggtttaaagttataatccatttgtctttctaacatatatattatttattctcacattacaaacatgactcaaatagacttattga 20002266  T
Q  229 atacatgaa 237  Q
    |||||||||    
T  20002265 atacatgaa 20002257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 33314601 - 33314504
Alignment:
Q  119 atacatactacataaatgtaatacgag-ttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaa 216  Q
    ||||||| ||||||||||||||| ||| |||||||||||||| | ||||||||||||| |||||| ||||| |||||||||| ||||||||||||||||    
T  33314601 atacataatacataaatgtaata-gagcttaaaatttacaataagtttgtatttctaacatatattatattcattctcacatgacatgcatgactcaaa 33314504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 119 - 237
Target Start/End: Original strand, 17034112 - 17034230
Alignment:
Q  119 atacatactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaaga 218  Q
    ||||||| ||||||| |||||||  ||||||||||||| || ||| | ||||||||| |||||| ||||||||| |||  ||||||| ||||||||||||    
T  17034112 atacataatacataagtgtaatattagttaaaatttacgatcactctatatttctaatatatataatatttattttcatttaacatggatgactcaaaga 17034211  T
Q  219 gctatattcaatacatgaa 237  Q
    |  |||||||||| |||||    
T  17034212 gtcatattcaatatatgaa 17034230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 119 - 237
Target Start/End: Original strand, 17077840 - 17077958
Alignment:
Q  119 atacatactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaaga 218  Q
    ||||||| ||||||| |||||||  ||||||||||||| || ||| | ||||||||| |||||| ||||||||| |||  ||||||| ||||||||||||    
T  17077840 atacataatacataagtgtaatattagttaaaatttacgatcactctatatttctaatatatataatatttattttcatttaacatggatgactcaaaga 17077939  T
Q  219 gctatattcaatacatgaa 237  Q
    |  |||||||||| |||||    
T  17077940 gtcatattcaatatatgaa 17077958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 119 - 237
Target Start/End: Original strand, 17088799 - 17088917
Alignment:
Q  119 atacatactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaaga 218  Q
    ||||||| ||||||| |||||||  ||||||||||||| || ||| | |||||| || |||||| ||||||||| |||  ||||||| ||||||||||||    
T  17088799 atacataatacataagtgtaatattagttaaaatttacgatcactctatatttccaatatatataatatttattttcatttaacatggatgactcaaaga 17088898  T
Q  219 gctatattcaatacatgaa 237  Q
    |  |||||||||| |||||    
T  17088899 gtcatattcaatatatgaa 17088917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 219
Target Start/End: Original strand, 41164431 - 41164549
Alignment:
Q  101 ttatttgatcgattataaatacatactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacata 200  Q
    ||||||||| ||||||| ||| ||  |||||| |||||||| ||||||||| ||||||| | ||||||||||||| |||||| |||||  || ||| ||     
T  41164431 ttatttgatagattatagatatatgatacatacatgtaatatgagttaaaaattacaatcattttgtatttctaacatatataatattcgttatcatatg 41164530  T
Q  201 acatgcatgactcaaagag 219  Q
    |||| ||||||| ||||||    
T  41164531 acatacatgactaaaagag 41164549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 3048348 - 3048279
Alignment:
Q  145 gttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactca 214  Q
    ||||||||||||||| | |||||| |||||| |||||| |||||||||||||||| ||||| ||||||||    
T  3048348 gttaaaatttacaatcaatttgtaattctaacatatataatatttattctcacatgacatgtatgactca 3048279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 236
Target Start/End: Original strand, 37442465 - 37442602
Alignment:
Q  100 attatttgatcgattataaatacatactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatattt--attctcac 197  Q
    |||||||||| ||| ||| |||  || | |||||||||| || |||||| |||||| ||| | ||| ||||| ||| |||||| ||||||  |||||||     
T  37442465 attatttgatagataatagatatgtatttcataaatgtagtaagagttagaatttataatcaattt-tatttttaacatatataatatttttattctcat 37442563  T
Q  198 ataacatgcatgactcaaagagctatattcaatacatga 236  Q
    ||||||||||||||||||||||  ||||| |||| ||||    
T  37442564 ataacatgcatgactcaaagagtcatatttaatatatga 37442602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 15232027 - 15232096
Alignment:
Q  127 tacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctca 196  Q
    ||||||||||||||| ||||||  ||||||||| ||| ||||| |||||  ||||| |||||||||||||    
T  15232027 tacataaatgtaatatgagttagcatttacaatcactctgtatatctaacttatataatatttattctca 15232096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 1605545 - 1605453
Alignment:
Q  102 tatttgatcgattataaatacatactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattct 194  Q
    |||||||| ||| ||| | ||||| ||||||||| || || || ||||||||||| |  ||||||||||||||| || ||| |||||||||||    
T  1605545 tatttgatggataatagaaacataatacataaatttattaagacttaaaatttacgaccactttgtatttctaacatctataatatttattct 1605453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 17251582 - 17251490
Alignment:
Q  145 gttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaagagctatattcaatacatgaa 237  Q
    |||||||||||| || |||||| ||| |||| |||||| ||||| |||||| ||| |||| ||||||| ||| |  |||||| |||| |||||    
T  17251582 gttaaaatttacgatcactttggattactaatatatatcatattcattctcgcatcacattcatgacttaaaaaattatatttaatatatgaa 17251490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 28852461 - 28852369
Alignment:
Q  145 gttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaagagctatattcaatacatgaa 237  Q
    ||||||||| | |||| ||||||||||| || |||||| | ||||||||||| || || |||||| ||||| |||   |||| ||||||||||    
T  28852461 gttaaaattgagaatttctttgtatttcgaacatatataaaatttattctcatatgacttgcatgtctcaatgagacttatttaatacatgaa 28852369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0457 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 115 - 219
Target Start/End: Original strand, 2205 - 2309
Alignment:
Q  115 ataaatacatactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactca 214  Q
    ||||||| ||| ||| ||||| |||||  ||||||| |||||||  ||||||||||| ||| |||||| |||||||||||||||| ||||||||| ||||    
T  2205 ataaataaataatacgtaaatataatagaagttaaattttacaaccactttgtatttttaacatatataatatttattctcacattacatgcatggctca 2304  T
Q  215 aagag 219  Q
    |||||    
T  2305 aagag 2309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 99 - 199
Target Start/End: Complemental strand, 25290219 - 25290119
Alignment:
Q  99 aattatttgatcgattataaatacatactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcaca 198  Q
    |||||||||| |||| ||| || |||| ||||||||| ||||| |||||||||||||| || ||||||||||||| | |||||||||||| | |||||||    
T  25290219 aattatttgaccgataatacatgcataatacataaatataatatgagttaaaatttaccatcactttgtatttcttacatatatgatattaactctcaca 25290120  T
Q  199 t 199  Q
    |    
T  25290119 t 25290119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 18891748 - 18891839
Alignment:
Q  146 ttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaagagctatattcaatacatgaa 237  Q
    |||||| ||||||| ||||||||||| ||| |||||| ||||| ||||||||||  |||| |||||||||||||  ||||| ||||||||||    
T  18891748 ttaaaagttacaatcactttgtatttgtaatatatataatattcattctcacattgcatgtatgactcaaagagtcatatttaatacatgaa 18891839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 33293572 - 33293667
Alignment:
Q  115 ataaatacatactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatga 210  Q
    |||||| |||| ||||||||| ||||  | | ||||||||||||| ||||||||||| ||| |||||| ||||||||||||||||| ||| |||||    
T  33293572 ataaatgcatattacataaatataatgggggctaaaatttacaatcactttgtatttttaacatatataatatttattctcacatatcatacatga 33293667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 19736503 - 19736444
Alignment:
Q  157 aattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaa 216  Q
    |||| |||||||||||||| |||||| |||||||||||||||| ||||| ||||||||||    
T  19736503 aatttctttgtatttctaacatatataatatttattctcacatgacatgtatgactcaaa 19736444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 42993028 - 42992941
Alignment:
Q  146 ttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaagagctatattcaataca 233  Q
    ||||| ||||||| |||||| ||||| |   |||||| |||||||||||||| | ||||||||||||||||||| |||||| ||||||    
T  42993028 ttaaagtttacaactactttttattttttccatatataatatttattctcacgtgacatgcatgactcaaagagttatatttaataca 42992941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 25545999 - 25546113
Alignment:
Q  127 tacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaagagctatatt 226  Q
    |||||||||||||||  |||||||||| | ||||  || |||||| ||| |||||| |||||||||||||||| |||| |||||| |||| ||   ||||    
T  25545999 tacataaatgtaataaaagttaaaattaataattgtttagtatttgtaacatatataatatttattctcacatgacatacatgacacaaatagacttatt 25546098  T
Q  227 caatacatgaaaaat 241  Q
     | ||||||||||||    
T  25546099 tattacatgaaaaat 25546113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 7606546 - 7606628
Alignment:
Q  152 tttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaagagctatattcaatacat 234  Q
    |||||| | ||||||||||| ||| |||||| ||||||||||||| || ||||||||||||  |||||  ||||| |||||||    
T  7606546 tttacactcactttgtatttttaacatatataatatttattctcatatgacatgcatgactataagagtcatatttaatacat 7606628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 233
Target Start/End: Original strand, 18878083 - 18878217
Alignment:
Q  99 aattatttgatcgattataaatacatactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcaca 198  Q
    ||||||||||| || |||| ||| | | ||||||||| |||||   ||| |||  |||||| ||||||||||| ||| |||||| ||||| ||||||| |    
T  18878083 aattatttgatagaatatagatatacaatacataaatataataacggtttaaacatacaatcactttgtatttttaatatatataatattaattctcata 18878182  T
Q  199 taacatgcatgactcaaagagctatattcaataca 233  Q
    |   ||||||||| ||||||| |||||| ||||||    
T  18878183 tgggatgcatgacacaaagagttatatttaataca 18878217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 42813976 - 42814068
Alignment:
Q  101 ttatttgatcgattataaatacatactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattc 193  Q
    ||||||||| ||| ||| ||||||| || |||||| ||||    ||||||||||||||| | ||||||||||||| |||||| ||||| ||||    
T  42813976 ttatttgatagataatagatacataatagataaatataatggaggttaaaatttacaatcaatttgtatttctaacatatataatattcattc 42814068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 35217524 - 35217599
Alignment:
Q  144 agttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaagag 219  Q
    ||||||||||||| || | ||||||| | ||| |||||| ||||||||| |||| |||||||||| | ||||||||    
T  35217524 agttaaaatttacgatcaatttgtatctttaacatatataatatttattatcacgtaacatgcattattcaaagag 35217599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 7371721 - 7371775
Alignment:
Q  145 gttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacat 199  Q
    |||||||||| |||| | ||||||||||||| |||||| |||||| |||||||||    
T  7371721 gttaaaatttgcaatcaatttgtatttctaacatatataatatttgttctcacat 7371775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 237
Target Start/End: Original strand, 45639796 - 45639929
Alignment:
Q  101 ttatttgatcgattataaatacatactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacata 200  Q
    ||||||||| ||| ||| ||||| | || ||||||||||||  ||||| | | |||||| | | ||||||||||| |||||  ||||  ||| ||| ||     
T  45639796 ttatttgattgataatagatacacaatatataaatgtaataaaagttata-tgtacaatcattatgtatttctaatatata--atatccattttcaaatt 45639892  T
Q  201 acatgcatgactcaaagagctatattcaatacatgaa 237  Q
    | |||||||||||||||||  ||||||||||||||||    
T  45639893 aaatgcatgactcaaagagtcatattcaatacatgaa 45639929  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 237
Target Start/End: Original strand, 4897970 - 4898055
Alignment:
Q  150 aatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaagagctatattcaatacatgaa 237  Q
    |||||| ||| ||||| ||||||||| |||||  ||||| ||| ||||||  ||||||||||||||||||  ||||| ||| ||||||    
T  4897970 aatttataatgactttatatttctaatatata--atattcattttcacatgtcatgcatgactcaaagagtgatatttaatgcatgaa 4898055  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 41189347 - 41189262
Alignment:
Q  119 atacatactacataaatgtaatacgag-ttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacat 204  Q
    ||||||| ||||||||||||||| ||| |||||||||||||| | ||||||||||||| |||||| ||||| |||||||||| ||||    
T  41189347 atacataatacataaatgtaata-gagcttaaaatttacaataagtttgtatttctaacatatattatattcattctcacatgacat 41189262  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 9529631 - 9529535
Alignment:
Q  119 atacatactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaa 216  Q
    ||||||| ||||||| ||||||| | ||||||||||||||| |  |||||||||||| |||||| ||||| |||||||||| |||| ||| |||||||    
T  9529631 atacataatacataattgtaatatg-gttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaa 9529535  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 35794053 - 35793988
Alignment:
Q  152 tttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaag 217  Q
    |||||||| ||||||||||| ||| |||||| |||||||||||||||| |||||||||| ||||||    
T  35794053 tttacaatcactttgtatttttaacatatataatatttattctcacatgacatgcatgattcaaag 35793988  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 5613323 - 5613240
Alignment:
Q  133 aatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaa 216  Q
    |||||||||| | |||||||||||||   |||||||||| ||| |||||| ||||| |||||||||| | || |||||||||||    
T  5613323 aatgtaatacaaattaaaatttacaaccgctttgtatttttaacatatataatattcattctcacatgatattcatgactcaaa 5613240  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 216
Target Start/End: Complemental strand, 17633543 - 17633454
Alignment:
Q  127 tacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaa 216  Q
    |||||||||||||||  |||||||||| | |||   ||||||||| ||| |||||| ||||  |||||||||||||||||  ||||||||    
T  17633543 tacataaatgtaataatagttaaaattgagaatctttttgtatttataacatatataatatgcattctcacataacatgccggactcaaa 17633454  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 299769 - 299704
Alignment:
Q  102 tatttgatcgattataaatacatactacataaatgtaatacgagttaaaatttacaattactttgt 167  Q
    |||||||| ||| ||| ||||||| ||||| ||||||| | || |||||||||||||| |||||||    
T  299769 tatttgatggataatagatacataatacatgaatgtaacaagaattaaaatttacaatcactttgt 299704  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 23936695 - 23936618
Alignment:
Q  133 aatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatga 210  Q
    ||||||||| | | |||||||||| || ||||||||||||||| |||||| |||||||||||||||| | ||||||||    
T  23936695 aatgtaataggggctaaaatttacgatgactttgtatttctaacatatataatatttattctcacatgatatgcatga 23936618  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 26015007 - 26014910
Alignment:
Q  122 catactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaagag 219  Q
    |||| |||||||||||||||   ||||||||||| ||| ||||| ||||||||| | |||| ||||||||| | |||  |||||||||||||||||||    
T  26015007 cataatacataaatgtaatagaggttaaaatttaaaataactttctatttctaacacatataatatttattttaacacgacatgcatgactcaaagag 26014910  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 241
Target Start/End: Complemental strand, 8033877 - 8033766
Alignment:
Q  130 ataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaagagctatattcaa 229  Q
    ||||||||||||   || |||||||| ||| ||| | ||| ||||| |||||| ||||||||| ||||||  ||||||||||||||||||  || || ||    
T  8033877 ataaatgtaatagaggtcaaaatttagaatgactctatatctctaatatatataatatttattttcacatggcatgcatgactcaaagagtaatttttaa 8033778  T
Q  230 tacatgaaaaat 241  Q
    ||||||||||||    
T  8033777 tacatgaaaaat 8033766  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 210
Target Start/End: Original strand, 28462802 - 28462891
Alignment:
Q  121 acatactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatga 210  Q
    ||||| ||||||||||||||| ||||||||| | | |||   ||||||||||||| |||||| | ||||||| |||||| ||||||||||    
T  28462802 acataatacataaatgtaataagagttaaaactgagaatctatttgtatttctaacatatataacatttattttcacatgacatgcatga 28462891  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 31763942 - 31763879
Alignment:
Q  150 aatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactc 213  Q
    |||||||  ||| ||||||||||||| |||||| ||||| ||||||||||| ||||||||||||    
T  31763942 aatttacttttattttgtatttctaacatatataatattcattctcacatatcatgcatgactc 31763879  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 35677549 - 35677461
Alignment:
Q  151 atttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaagagctatattcaatacatgaaaa 239  Q
    ||||||||| ||||||| |||  || |||||| |||| ||||||||||| |||||||||||| ||| |   ||||| ||||||||||||    
T  35677549 atttacaatcactttgttttttgaacatatataatatgtattctcacatgacatgcatgacttaaaaattaatatttaatacatgaaaa 35677461  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 31746631 - 31746580
Alignment:
Q  161 actttgtatttctaaaatatatgatatttattctcacataacatgcatgact 212  Q
    ||||||||||||||| |||||| ||||| ||||||||||| |||| ||||||    
T  31746631 actttgtatttctaacatatataatattcattctcacatatcatgtatgact 31746580  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 14702864 - 14702936
Alignment:
Q  146 ttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaaga 218  Q
    |||||||||||||| |||||||||| || | |||||| ||||| |||||||||| |||| |||||||| ||||    
T  14702864 ttaaaatttacaatcactttgtattacttacatatataatattcattctcacatgacatacatgactctaaga 14702936  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 14703149 - 14703221
Alignment:
Q  146 ttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaaga 218  Q
    |||||||||||||| |||||||||| || | |||||| ||||| |||||||||| |||| |||||||| ||||    
T  14703149 ttaaaatttacaatcactttgtattacttacatatataatattcattctcacatgacatacatgactctaaga 14703221  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 238
Target Start/End: Complemental strand, 32362297 - 32362159
Alignment:
Q  100 attatttgatcgattataaatacatactacataaatgtaatacgagttaaaatttacaattactttgtatttctaaaatatatgatatttattctcacat 199  Q
    ||||||| || ||| ||| ||||||| || ||||||||||||  | || ||||| ||||| | ||||||||||| | |||||| |||||||||| || ||    
T  32362297 attatttaatggatgatagatacataataaataaatgtaatattattttaaattcacaatcattttgtatttctgacatatataatatttattcacatat 32362198  T
Q  200 aacatgcatgactcaaagagctatattcaatacatgaaa 238  Q
     ||| |||||| ||||| |   ||||| |||||||||||    
T  32362197 gacaagcatgagtcaaataatcatatttaatacatgaaa 32362159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 10128586 - 10128521
Alignment:
Q  154 tacaattactttgtatttctaaaatatatgatatttattctcacataacatgcatgactcaaagag 219  Q
    |||||| ||||| |||||||||||||||| ||||| ||| ||||||||||| ||| | ||||||||    
T  10128586 tacaatcactttatatttctaaaatatataatattgattatcacataacatacatcaatcaaagag 10128521  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 137349 - 137399
Alignment:
Q  145 gttaaaatttacaattactttgtatttctaaaatatatgatatttattctc 195  Q
    ||||||||||||||| ||||| ||||||||| |||||| ||||||| ||||    
T  137349 gttaaaatttacaatcactttatatttctaatatatataatatttactctc 137399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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