View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350-Insertion-16 (Length: 308)
Name: NF1350-Insertion-16
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350-Insertion-16 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 7 - 295
Target Start/End: Original strand, 1144535 - 1144823
Alignment:
| Q |
7 |
actttgtaatctgttattagtaataaattttgcacacttgacagattagtgtaatataatctttacattttgcattattttagcatcaaccaaaacttaa |
106 |
Q |
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| T |
1144535 |
actttgtaatctgttattagtaataaattttgcacacttgacagattagtgtaatataatctttacattttgcattattttagcatcaaccaaaacttaa |
1144634 |
T |
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| Q |
107 |
ttttcttcttctggttttctattctacatacacttgcatattagttcctatgtagactatatatacgtgctagaagacttcagttctaaaatggttcctt |
206 |
Q |
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| T |
1144635 |
ttttcttcttctggttttctattcaacatacacttgcatattagttcctatgtagactatatatacgtgctagaagacttcagttctaaaatggttcctt |
1144734 |
T |
|
| Q |
207 |
ctaattgaaatgatgaaacatgagaatcatcaattcattgatttttcctcatttggttagtgagagaagaatttgattgttcaaatgaa |
295 |
Q |
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| T |
1144735 |
ctaattaaaatgatgaaacatgagaatcatcaattcattgatttttcctcatttggttagtgagagaagaatttgattgttcaaatgaa |
1144823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 156 - 305
Target Start/End: Original strand, 8296344 - 8296491
Alignment:
| Q |
156 |
atgtagactatatatacgtgctagaagacttcagttctaaaatggttccttctaattgaaatgatgaaacatgagaatcatcaattcattgatttttcct |
255 |
Q |
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| T |
8296344 |
atgtatactagacatacatgctagaagacttcagttctaaaatggttgcttccaattgaaattatgaaacatgaggatcaacaattcatatattttt-ct |
8296442 |
T |
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| Q |
256 |
catttggttagtgagagaagaatttgattgttcaaatgaaactaaatgaa |
305 |
Q |
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| T |
8296443 |
catttggtaagttagagaagaatttgattgttataatg-aactaaatgaa |
8296491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 18281345 - 18281217
Alignment:
| Q |
7 |
actttgtaatctgttattagtaataaattttgcacacttgacagattagtgtaatataatctttacattttgcattattttagcatcaaccaaaacttaa |
106 |
Q |
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| T |
18281345 |
actttgtaatctgttattagtataaaattctgcacacttggcagattagtgtag-ataat--ttacattttggatttttttaccatcaaccaaaccttag |
18281249 |
T |
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| Q |
107 |
ttttcttcttctggttttctattctacataca |
138 |
Q |
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| T |
18281248 |
ttttcttcttctggttttctattctacataca |
18281217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 8295312 - 8295421
Alignment:
| Q |
8 |
ctttgtaatctgttattagtaataaattttgcacacttgacagattagtgtaatataatctttacattttgcattattttagcatcaaccaaaacttaat |
107 |
Q |
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| T |
8295312 |
ctttgtaatatgttattagtaaaaaattctgcacacttggcagattagtgtag-ataatttttacattttggattattttagcatcaaccaaaacttagt |
8295410 |
T |
|
| Q |
108 |
tttcttcttct |
118 |
Q |
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|||||||||| |
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| T |
8295411 |
cttcttcttct |
8295421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 180 - 308
Target Start/End: Complemental strand, 18280377 - 18280251
Alignment:
| Q |
180 |
aagacttcagttctaaaatggttccttctaattgaaatgatgaaacatgagaatcatcaattcattgatttttcctcatttggttagtgagagaagaatt |
279 |
Q |
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| T |
18280377 |
aagacttcagttctaaaatggttgcttccaattgaaattatgaattatgaggatcatcaattcattgattttt-ctcagttggtccgttagagaagaatt |
18280279 |
T |
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| Q |
280 |
tgattgttcaaatgaaactaaatgaagcc |
308 |
Q |
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|||||| | |||| |||||||||||||| |
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| T |
18280278 |
tgattggtataatg-aactaaatgaagcc |
18280251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 139
Target Start/End: Original strand, 8295421 - 8295451
Alignment:
| Q |
109 |
ttcttcttctggttttctattctacatacac |
139 |
Q |
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| T |
8295421 |
ttcttcttctggttttctattctacatacac |
8295451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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