View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350-Insertion-18 (Length: 276)
Name: NF1350-Insertion-18
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350-Insertion-18 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 4708965 - 4709142
Alignment:
| Q |
8 |
ttccggacatgtgtgccatttaacaaaagaaccttcattttttcaatcaaattagtgaaaaacagaaaattgagcgaaaaactagataacttcaaatgtt |
107 |
Q |
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| T |
4708965 |
ttccggtcatgtgtgccatttaacataagaaccttcattttttcaatcaaattagtgaaaaacagaaaattgagcgaaaaactagataacttcaaatgtt |
4709064 |
T |
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| Q |
108 |
tgagatttctaaatataacccaccattactcaaccaatataacatataatccagtgtgaagcccatgcatagtagcgc |
185 |
Q |
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| T |
4709065 |
tgagatttctaaatataacccaccattactcaaccaatataacatataatccagtgtgaagctcatgcatagtagcgc |
4709142 |
T |
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Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 4746910 - 4747081
Alignment:
| Q |
10 |
ccggacatgtgtgccatttaacaaaagaaccttcatttttt--caatcaaattagtgaaaaacagaaaattgagcgaaaaactagataacttcaaatgtt |
107 |
Q |
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| T |
4746910 |
ccggtcatgtgtgccatttaacataagtaccttcattttttgtcaatcaaattagtgaaaaactgaaaattaagctaaaaagtagataacttcaaatgtt |
4747009 |
T |
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| Q |
108 |
tgagatttctaaatataacccaccattactcaaccaatataacatataatccagtgtgaagcccatgcatag |
179 |
Q |
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| T |
4747010 |
tgaaattttcaaatctaacccaacattactcaatcaataaaacagataatacagtgtgaagctcatgcatag |
4747081 |
T |
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