View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350-Insertion-19 (Length: 254)
Name: NF1350-Insertion-19
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350-Insertion-19 |
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| [»] chr7 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 254
Target Start/End: Original strand, 14748520 - 14748766
Alignment:
| Q |
8 |
gtatatactttctaatgttgaaaacaattatttgtatcacactaatatataatcttactgnnnnnnnngaccaattctaagcaagatacagatacagttt |
107 |
Q |
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| T |
14748520 |
gtatatactttctaatgttgaaaacaattatttgtatcacactaatatataatcttactgaaaaaaaagaccaattctaagcaagatacagatacagttt |
14748619 |
T |
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| Q |
108 |
tctgtcactatcatctctctccaaaaagtccctttcaatgagagtctcaatccgtttctttatgtctgttggatttgcaaggaatcgcgactgcaactgc |
207 |
Q |
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| T |
14748620 |
tctgtcactatcatctctctccaaaaagtccctttcaatgagagactcaatccgtttctttatgtctgttggatttgcaaggaatcgcgactgcaactgc |
14748719 |
T |
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| Q |
208 |
tttgtgacctcagctataagattgttgtgctcaagttgcttcctaga |
254 |
Q |
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| T |
14748720 |
tttgtgacctcagctataagattgttgtgctcaagttgcttcctaga |
14748766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 77 - 251
Target Start/End: Original strand, 14763638 - 14763812
Alignment:
| Q |
77 |
accaattctaagcaagatacagatacagttttctgtcactatcatctctctccaaaaagtccctttcaatgagagtctcaatccgtttctttatgtctgt |
176 |
Q |
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| T |
14763638 |
accaattctaggcaagatatcgatacagttttctgtcaacagtatctctttccaaaaattcccgctcaaggagagactcaatccgtttctttacatccgt |
14763737 |
T |
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| Q |
177 |
tggatttgcaaggaatcgcgactgcaactgctttgtgacctcagctataagattgttgtgctcaagttgcttcct |
251 |
Q |
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| T |
14763738 |
tggatttgtaaggaatcgcgactgcaactgctgcgtgacctcagccataagattgttgtgctcaagttgcttcct |
14763812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 77 - 233
Target Start/End: Original strand, 17620696 - 17620852
Alignment:
| Q |
77 |
accaattctaagcaagatacagatacagttttctgtcactatcatctctctccaaaaagtccctttcaatgagagtctcaatccgtttctttatgtctgt |
176 |
Q |
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| T |
17620696 |
accaactctaagcaagataccgatacagttttctgttactgttatctctctccaaaaagtccctctcaatgagagactcaatctgtttttttacctctgt |
17620795 |
T |
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| Q |
177 |
tggatttgcaaggaatcgcgactgcaactgctttgtgacctcagctataagattgtt |
233 |
Q |
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| T |
17620796 |
tggatttgcaaggaatcgcgaccgcaactgctttgtgacctcagctataagattgtt |
17620852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 77 - 251
Target Start/End: Complemental strand, 17564961 - 17564787
Alignment:
| Q |
77 |
accaattctaagcaagatacagatacagttttctgtcactatcatctctctccaaaaagtccctttcaatgagagtctcaatccgtttctttatgtctgt |
176 |
Q |
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| T |
17564961 |
accaattctaggcaagatatcgatacagttttctgtcaacaggatctctttccaaaaattcccgctcaaggagagactcaatccgtttctttacatccgt |
17564862 |
T |
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| Q |
177 |
tggatttgcaaggaatcgcgactgcaactgctttgtgacctcagctataagattgttgtgctcaagttgcttcct |
251 |
Q |
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| T |
17564861 |
tggatttgtaaggaatcgcgactgcaactgctgcgtgacctcagccataagattgttgtgctcaagttgcttcct |
17564787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 79 - 254
Target Start/End: Original strand, 24394060 - 24394235
Alignment:
| Q |
79 |
caattctaagcaagatacagatacagttttctgtcactatcatctctctccaaaaagtccctttcaatgagagtctcaatccgtttctttatgtctgttg |
178 |
Q |
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| T |
24394060 |
caattctatgcaagataccgatacatttttctgtcgttatcatccctctccaaaaagtcccgctcaatgagagactcaatgcgtttcttgacctctgttg |
24394159 |
T |
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| Q |
179 |
gatttgcaaggaatcgcgactgcaactgctttgtgacctcagctataagattgttgtgctcaagttgcttcctaga |
254 |
Q |
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| T |
24394160 |
gatttgcaaggaaacgtaactgcaactgctttgtgacttcagctataagattgttatgatcaagtagcctcctaga |
24394235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 77 - 251
Target Start/End: Original strand, 15214496 - 15214670
Alignment:
| Q |
77 |
accaattctaagcaagatacagatacagttttctgtcactatcatctctctccaaaaagtccctttcaatgagagtctcaatccgtttctttatgtctgt |
176 |
Q |
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| T |
15214496 |
accaattctaagcaagataacgatacaattttctgtcactgttatctctctccaaaaacaccctctcaattagagactcaatccgtttctttacctccgt |
15214595 |
T |
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| Q |
177 |
tggatttgcaaggaatcgcgactgcaactgctttgtgacctcagctataagattgttgtgctcaagttgcttcct |
251 |
Q |
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| T |
15214596 |
tggatttgcaaggaatcgagactgcaactgctttgttacttcagctacaagattattgtgttccagtttcttcct |
15214670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 77 - 254
Target Start/End: Original strand, 15194078 - 15194255
Alignment:
| Q |
77 |
accaattctaagcaagatacagatacagttttctgtcactatcatctctctccaaaaagtccctttcaatgagagtctcaatccgtttctttatgtctgt |
176 |
Q |
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| T |
15194078 |
accaattctaagcaagataacgatacaattttctgtcactgttatctctctccaaaaacaccctctcaattagagactcaatctgtttctttacctccgt |
15194177 |
T |
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| Q |
177 |
tggatttgcaaggaatcgcgactgcaactgctttgtgacctcagctataagattgttgtgctcaagttgcttcctaga |
254 |
Q |
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| T |
15194178 |
tggatttgcaaggaatcgagactgcaactgctttgttacttcagctacaagattattgtgttccagtttcttcctaga |
15194255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 77 - 251
Target Start/End: Original strand, 15204763 - 15204937
Alignment:
| Q |
77 |
accaattctaagcaagatacagatacagttttctgtcactatcatctctctccaaaaagtccctttcaatgagagtctcaatccgtttctttatgtctgt |
176 |
Q |
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| T |
15204763 |
accaattctaagcaagataacgatacaatttcctgtcactgttatctctctccaaaaacaccctctcaattagagactcaatctgtttctttacctccgt |
15204862 |
T |
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| Q |
177 |
tggatttgcaaggaatcgcgactgcaactgctttgtgacctcagctataagattgttgtgctcaagttgcttcct |
251 |
Q |
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| T |
15204863 |
tggatttgcaaggaatcgagactgcaactgctttgttacttcagctacaagattattgtgttccagtttcttcct |
15204937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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