View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350-Insertion-22 (Length: 249)
Name: NF1350-Insertion-22
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350-Insertion-22 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 31363135 - 31362891
Alignment:
| Q |
8 |
tatatcgtgtctaactcatccgtaaaccgagaggtgtcactctcaccgatcagtgtttttacatgcattgaggacttgctcttgccacttgaattaaaaa |
107 |
Q |
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| T |
31363135 |
tatatcgtgtccaactcatccgtaaaccgagaggtgtcactcttaccgataagtgtttttacatgcattgaggacttgctcttgccacttaaattaaaaa |
31363036 |
T |
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| Q |
108 |
tacatgcnnnnnnnnnnnnn----tgagactctctaccgctaagttattgatatatctgaacttctctcttccttgttaataattttaagataagatggt |
203 |
Q |
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| T |
31363035 |
tacatgctatatatatatatatattgagactctctactgctaagttattgatatatctgaacttctctcttccttgttaataattttaagataagatggc |
31362936 |
T |
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| Q |
204 |
cacatccactcaatgtttcttcctttcactcattctcatttggtt |
248 |
Q |
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| T |
31362935 |
cacatccactcaatgtttcttcctttcactcattctcatttggtt |
31362891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 31295394 - 31295328
Alignment:
| Q |
181 |
taataattttaagataagatggtcacatccactcaatgtttcttcctttcactcattctcatttggt |
247 |
Q |
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| T |
31295394 |
taataattttaagataagatggctagatccactcaatttttcttcctttcattcattctcatttggt |
31295328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 31258233 - 31258138
Alignment:
| Q |
154 |
atatatctgaacttctctcttccttgttaataattttaagataagatggtcacatccactcaatgtttcttcctttcactcattctcatttggttc |
249 |
Q |
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| T |
31258233 |
atatacctgcacttctcttttccttgttaatcattttaagataagatgaacacttcatctcaatttctcttcctttcactcattataatttggttc |
31258138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 31310675 - 31310629
Alignment:
| Q |
149 |
tattgatatatctgaacttctctcttccttgttaataattttaagat |
195 |
Q |
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| T |
31310675 |
tattgatatatctaaacttatcttttccttgttaataattctaagat |
31310629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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