View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350-Insertion-23 (Length: 273)
Name: NF1350-Insertion-23
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350-Insertion-23 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 167 - 273
Target Start/End: Complemental strand, 1685330 - 1685224
Alignment:
| Q |
167 |
gtgatttcatcaaactcatagtgattttaataaagataaacttcaaaaacatacacttacgctattagttttcaaagcttcaataaaataacaatgttaa |
266 |
Q |
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| T |
1685330 |
gtgatttcatcaaactcatcctgatttttttaaagataaacttcaaaaacatacacttacactattagtcttaaaagcttcaataaaataacgatgttaa |
1685231 |
T |
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| Q |
267 |
ctattga |
273 |
Q |
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||||||| |
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| T |
1685230 |
ctattga |
1685224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 1685389 - 1685234
Alignment:
| Q |
16 |
tctaatttgggtaaaattgatttttagaagtttcaacaaaataaaataacc--------gtgatttcatcaaactcattatgattttattaaagataagc |
107 |
Q |
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| T |
1685389 |
tctaatttcggaaaaactgatttttagaagtttcaataaaattaaataacaatgtcacagtgatttcatcaaactcatcctgatttttttaaagataaac |
1685290 |
T |
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| Q |
108 |
ttcaaaaacatacacttacactattagt-ttgaaagcttcaatgaaacaacgatgt |
162 |
Q |
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| T |
1685289 |
ttcaaaaacatacacttacactattagtcttaaaagcttcaataaaataacgatgt |
1685234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 1695821 - 1695756
Alignment:
| Q |
208 |
ttcaaaaacatacacttacgctattagttttcaaagcttcaataaaataacaatgttaactattga |
273 |
Q |
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| T |
1695821 |
ttcaataacatacacttacactattagttttcaaagcttcaataaaataacaatgttaactattga |
1695756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 1695858 - 1695817
Alignment:
| Q |
10 |
tatcactctaatttgggtaaaattgatttttagaagtttcaa |
51 |
Q |
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| T |
1695858 |
tatcactctaatttgggtaaaactgatttttagaagtttcaa |
1695817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 31464782 - 31464753
Alignment:
| Q |
167 |
gtgatttcatcaaactcatagtgattttaa |
196 |
Q |
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| T |
31464782 |
gtgatttcatcaaactcatagtgattttaa |
31464753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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