View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1350-Insertion-24 (Length: 265)
Name: NF1350-Insertion-24
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1350-Insertion-24 |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 8 - 211
Target Start/End: Complemental strand, 50039236 - 50039016
Alignment:
| Q |
8 |
gtcaagacatctaatatagtcataattcattggaacttagtaatcaatagttttaaagtttataaatgcnnnnnnnngttacattataaatgcttctttt |
107 |
Q |
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| T |
50039236 |
gtcaagacatctaatatagtcataattcattggaacttagtaatcaatagttttaaagtttataaatgcttttttttgttacattataaatgcttctttt |
50039137 |
T |
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| Q |
108 |
aaaaca---------------aattttttaacaagtactact-----attatataaacaattgctaacagcatctttaatggaattgttctaattaatgg |
187 |
Q |
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|||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50039136 |
aaaacaaaattttcaatttttaaatttttaacaagtactactactccattatataaacaattgctaacagcatctttaatggaattg---taattaatgg |
50039040 |
T |
|
| Q |
188 |
agacttttatttagaatgaaaagc |
211 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
50039039 |
agacttttatttagaatgaaaagc |
50039016 |
T |
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