View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1350-Insertion-9 (Length: 469)

Name: NF1350-Insertion-9
Description: NF1350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1350-Insertion-9
NF1350-Insertion-9
[»] chr5 (3 HSPs)
chr5 (225-364)||(41531870-41532009)
chr5 (7-92)||(41531652-41531737)
chr5 (389-469)||(41532028-41532108)


Alignment Details
Target: chr5 (Bit Score: 136; Significance: 9e-71; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 225 - 364
Target Start/End: Original strand, 41531870 - 41532009
Alignment:
Q  225 tctttaacattgatgtttgatatccagtatgatgattttcataaaatatttcaccgatttttggtcttgaaagcaccaaatattaaactaaacatcaaat 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41531870 tctttaacattgatgtttgatatccagtatgatgattttcataaaatatttcaccgatttttggtcttgaaagcaccaaatattaaactaaacatcaaat 41531969  T
Q  325 gaaagttttgtatggactaaacatagtatgagaataatcc 364  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  41531970 gaaaattttgtatggactaaacatagtatgagaataatcc 41532009  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 41531652 - 41531737
Alignment:
Q  7 atatactaaccacaacaacttaaccttatcgcataaagtagagtcgtcaaatatatatagagagtattaagctttagtgttgtctc 92  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41531652 atatactaaccacaacaacttaaccttatagcataaagtagagtcgtcaaatatatatagagagtattaagctttagtgttgtctc 41531737  T

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Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 389 - 469
Target Start/End: Original strand, 41532028 - 41532108
Alignment:
Q  389 catagtatgagaagttcacaacacatcatccttagaaatattttgtcacagtaagatcgttcgtgaaaaaatgagtgatag 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41532028 catagtatgagaagttcacaacacatcatccttagaaatattttgtcacagtaagattgttcgtgaaaaaatgagtgatag 41532108  T

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