View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13500_low_1 (Length: 739)
Name: NF13500_low_1
Description: NF13500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13500_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 555; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 13 - 735
Target Start/End: Complemental strand, 44006310 - 44005581
Alignment:
| Q |
13 |
atcatcatgttactttagacaggacaattgatcactttcataataacatttggttgtagnnnnnnncaaagaaaaacatccgattactatagacannnnn |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44006310 |
atcatcatgttactttagacaggacaattgatcactttcataataacatttggttgtagtttttttcaaagaaaaacatccgattactatagacatattt |
44006211 |
T |
|
| Q |
113 |
nnnnnnnngaattagcaaaatttattaatcacaggaagctttgagcacaagatgagcaagagcacgcaaaagggaatacaaaagagagaaacaacaagaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44006210 |
ttttttt-gaattagcaaaatttattaatcacaggaagctttgagcacaagatgagcaagagcacgcaaaagggaatacaaaagagagaaacaa---gaa |
44006115 |
T |
|
| Q |
213 |
aaataacagcagcagctgagctaacacagtaataattactatagacatggcagttgcttaaacaaaataaatctgaattatttgcataatcatgttactt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006114 |
aaataacagcagcagctgagctaacacagtaataattactatagacatggcagttgcttaaacaaaataaatctgaattatttgcataatcatgttactt |
44006015 |
T |
|
| Q |
313 |
tttattctcccgttatagatcaataccaacaaaagtaaagacaatggatatgtaagaacatagccatgcagatgacactaggaattccnnnnnnncctct |
412 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44006014 |
tttattctcccgttatagatcaatatcaacaaaagtaaagacaatggatatgtaagaacatagccatgcagatgacactaggaattcctttttttcctct |
44005915 |
T |
|
| Q |
413 |
tctggcctctagactttgcataatactaatttaattataaggattacattcttttgatagattttgtccaaacacagcgttggttttgttccatctgcct |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44005914 |
tctggcctctagactttgcataatactaatttaattataaggattacattcttttgatagattttgtccaaacacagcgttggttttgttccatctgcct |
44005815 |
T |
|
| Q |
513 |
aagagaagttttcatatattcacattac------------tataataatgttcatgatgctgaaaatgggaccgaaagagnnnnnnnnncggctaataaa |
600 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44005814 |
aagagaagttttcatatattcacattactataataatgtatataataatgttcatgatgctgaaaatgggaccgaaagagttttttttt-ggctaataaa |
44005716 |
T |
|
| Q |
601 |
atatgttcttattccatttccagcattccttgattgttgctgaatccaacttgttcatcatggcattacattaccagtgtcaccatctaccaaatgatca |
700 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44005715 |
atatgttcttattccatttccagcattccttgattgttgctgaatccaacttgttcatcatggcattacattaccagtgtcaccatctaccaaatgatca |
44005616 |
T |
|
| Q |
701 |
atgagcatttcccttatccaaacaaatctctgaaa |
735 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
44005615 |
atgagcatttcccttatccaaacaaatctctgaaa |
44005581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 638 - 727
Target Start/End: Complemental strand, 44009605 - 44009519
Alignment:
| Q |
638 |
tgctgaatccaacttgttcatcatggcattacattaccagtgtcaccatctaccaaatgatcaatgagcatttcccttatccaaacaaat |
727 |
Q |
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|||| ||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44009605 |
tgctaaatccaacttgttcag---ggcaatacattacgagtgtcaccatctaccaaatgatcaatgagcatttcccttatccaaacaaat |
44009519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 453 - 545
Target Start/End: Complemental strand, 44009852 - 44009759
Alignment:
| Q |
453 |
ggattacattcttttgatagattttgtcca-aacacagcgttggttttgttccatctgcctaagagaagttttcatatattcacattactataa |
545 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| |||||| || ||||||| | |||||||||| |
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| T |
44009852 |
ggattacattcttttgatagattttgtccacaacacagcattggttttgttccatctacctatgagaagattgtatatattaatattactataa |
44009759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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