View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13500_low_2 (Length: 637)
Name: NF13500_low_2
Description: NF13500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13500_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 39 - 614
Target Start/End: Original strand, 36675947 - 36676522
Alignment:
| Q |
39 |
taaacctgatctaattatttaaaactcaacaatttcatctatagtaatagaagaagcatattctaatctccttaatgcatcagaatcattactagaacca |
138 |
Q |
| |
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|||||| |||||||||||||||||||| |||||||| || |||| ||||||||||||||||||||||| |||||||| |||||||||| || ||||||| |
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| T |
36675947 |
taaacccgatctaattatttaaaactcgacaatttcgtccataggaatagaagaagcatattctaatccccttaatgtgtcagaatcatcaccagaacca |
36676046 |
T |
|
| Q |
139 |
tttggtcctttcctgacgttgctcatcttgttgtaaacgtcaagcattgttggcctttggcctggaaaagggtgaacacactcacaggcaatattgatga |
238 |
Q |
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|||||||| ||||| ||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||| |
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| T |
36676047 |
tttggtcccttcctaacgttcctcatattgttgtaaacttcaagcattgttggcctttggtctggaaaagggtgaacacactcacaggcaatcttaatga |
36676146 |
T |
|
| Q |
239 |
gagtacaaacttcattttcaagtccttccccggtcaaagatttatcaataacattataaaaattcaaagggttaccacatagattagtagtgtcagataa |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
36676147 |
gagtacaaacttcattttcaagtccttccccggtcaaagatttatcaataacattataaaaactcaaagggttaccacatagattagtagtgtcagatga |
36676246 |
T |
|
| Q |
339 |
attcgacaattcattatatgttttccctgtcatcaattcaaaaagaacacttccaaagtcgtagacatccttcttaccgtcattcactttaaacatcgtg |
438 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||||| || |
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| T |
36676247 |
acgcgacaattcattatatgttttccctgtcatcaattcaaaaagcacacttccaaagtcgtagacatccttcttcccgtcgttcaccttaaacatcatg |
36676346 |
T |
|
| Q |
439 |
ctgagatgatcttcaatgttgggattcataaatttggcttctccaaaattgtatattttgggttcaaaattctcatctagcaatatgcattctgaacata |
538 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
36676347 |
ccaagatgatcttcaatgttgggattcataaatttggcctctccaaaattggatatttttggttcaaagttctcatctagcaatatgcattctgaacata |
36676446 |
T |
|
| Q |
539 |
tattaaaatgcactatgcccaaatcgcatgtatgatgtagccatgataaccctcttgctattccaagtgcaatgtt |
614 |
Q |
| |
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| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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|
| T |
36676447 |
tgctaaaatgcactatgcccaaatcgcatgtatgatgcagccatgataaccctcttgctattccaaatgcaatgtt |
36676522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 13 - 614
Target Start/End: Original strand, 36673167 - 36673767
Alignment:
| Q |
13 |
ccgacataacaaaagctatgaatgcttaaacctgatctaattatttaaaactcaacaatttcatctatagtaatagaagaagcatattctaatctcctta |
112 |
Q |
| |
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|||| ||||||||| ||||| |||| || ||||||||| |||||||||| |||||||||||| ||||||||||| |||| |||||||||||||| ||||| |
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| T |
36673167 |
ccgatataacaaaacctatggatgcgtacacctgatcttattatttaaa-ctcaacaatttcgtctatagtaattgaagtagcatattctaatcccctta |
36673265 |
T |
|
| Q |
113 |
atgcatcagaatcattactagaaccatttggtcctttcctgacgttgctcatcttgttgtaaacgtcaagcattgttggcctttggcctggaaaagggtg |
212 |
Q |
| |
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|| ||||||| |||| ||| | |||| |||| ||||| || |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
36673266 |
atctgtcagaattattaacagagctattttgtcccttccttacattgctcatattgttgtaaacttcaagcattgttggcctttggtctggaaaagggtg |
36673365 |
T |
|
| Q |
213 |
aacacactcacaggcaatattgatgagagtacaaacttcattttcaagtccttccccggtcaaagatttatcaataacattataaaaattcaaagggtta |
312 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| |
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| T |
36673366 |
aacacactcacaggcaatcttaatgagagtacaaacttcattttcaagtccttccccggtcaaagatttatcaatgacgttataaaaactcaaagggtta |
36673465 |
T |
|
| Q |
313 |
ccacatagattagtagtgtcagataaattcgacaattcattatatgttttccctgtcatcaattcaaaaagaacacttccaaagtcgtagacatccttct |
412 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36673466 |
ccacatagattagtagtgtcagatgaacgcgacaattcattatatgttttccctgtcatcaattcaaaaagcacacttccaaagtcgtagacatccttct |
36673565 |
T |
|
| Q |
413 |
taccgtcattcactttaaacatcgtgctgagatgatcttcaatgttgggattcataaatttggcttctccaaaattgtatattttgggttcaaaattctc |
512 |
Q |
| |
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| ||||| | ||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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|
| T |
36673566 |
tcccgtcgtccaccttaaacatcatgccaagatgatcttcaatgttgggattcataaatttggcctctccaaaattggatattttgggttcaaaattctc |
36673665 |
T |
|
| Q |
513 |
atctagcaatatgcattctgaacatatattaaaatgcactatgcccaaatcgcatgtatgatgtagccatgataaccctcttgctattccaagtgcaatg |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36673666 |
atctagcaatatgcattctgaacatatattaaaatgcactatgcccaaatcacagctatgatgcagccatgataaccctcttgctattccaagtgcaatg |
36673765 |
T |
|
| Q |
613 |
tt |
614 |
Q |
| |
|
|| |
|
|
| T |
36673766 |
tt |
36673767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 94 - 419
Target Start/End: Original strand, 36695531 - 36695856
Alignment:
| Q |
94 |
gcatattctaatctccttaatgcatcagaatcattactagaaccatttggtcctttcctgacgttgctcatcttgttgtaaacgtcaagcattgttggcc |
193 |
Q |
| |
|
|||||||| |||| |||||||| |||||||||| || | ||||||||||| |||||| | |||||||| ||||||||||| ||||||||||||| || |
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|
| T |
36695531 |
gcatattcaaatccccttaatgtgtcagaatcatcaccataaccatttggtggcttcctgtcattgctcatattgttgtaaacttcaagcattgttgacc |
36695630 |
T |
|
| Q |
194 |
tttggcctggaaaagggtgaacacactcacaggcaatattgatgagagtacaaacttcattttcaagtccttccccggtcaaagatttatcaataacatt |
293 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36695631 |
tttggtctggaaaagggtgaacacactcacaggcaatcttaatgagagtacaaacttcattttcaagtccttccccggtcaaagatttatcaataacatt |
36695730 |
T |
|
| Q |
294 |
ataaaaattcaaagggttaccacatagattagtagtgtcagataaattcgacaattcattatatgttttccctgtcatcaattcaaaaagaacacttcca |
393 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36695731 |
ataaaaactcaaagggttaccacatagattagtagtgtcagatgaacgcgacaattcattatatgttttccctgtcatcaattcaaaaagcacacttcca |
36695830 |
T |
|
| Q |
394 |
aagtcgtagacatccttcttaccgtc |
419 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
36695831 |
aagtcgtagacatccttcttcccgtc |
36695856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 157 - 614
Target Start/End: Original strand, 36683741 - 36684195
Alignment:
| Q |
157 |
ttgctcatcttgttgtaaacgtcaagcattgttggcctttggcctggaaaagggtgaacacactcacaggcaatattgatgagagtacaaacttcatttt |
256 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| |||||| | | ||| | |||||||||||| ||||| || | ||||| ||| ||| |||||| |
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| T |
36683741 |
ttgctcaaattgttgtaaacttcaagcattgttggtctttggttt---ataggtttaacacactcacatgcaatctttaggagagcacatactccatttt |
36683837 |
T |
|
| Q |
257 |
caagtccttccccggtcaaagatttatcaataacattataaaaattcaaagggttaccacatagattagtagtgtcagataaattcgacaattcattata |
356 |
Q |
| |
|
||| ||||| ||| | || |||||||||||| ||||||||||||| |||||||| || | |||||||| ||| ||| || | || ||| ||||| |
|
|
| T |
36683838 |
caaatccttgcccaggcagagatttatcaatggcattataaaaatttgaagggttatcatagagattagtggtggtggatgaacgagtcagttcgttata |
36683937 |
T |
|
| Q |
357 |
tgttttccctgtcatcaattcaaaaagaacacttccaaagtcgtagacatccttcttaccgtcattcactttaaacatcgtgctgagatgatcttcaatg |
456 |
Q |
| |
|
|||||| ||||| |||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36683938 |
tgtttttcctgtaatcagttcaaaaagcacacttccaaagtcgtagacatccttcttcccgtcattcactttaaacatcgtgctgagatgatcttcaatg |
36684037 |
T |
|
| Q |
457 |
ttgggattcataaatttggcttctccaaaattgtatattttgggttcaaaattctcatctagcaatatgcattctgaacatatattaaaatgcactatgc |
556 |
Q |
| |
|
||||||||||||||||| || | ||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
36684038 |
ttgggattcataaatttcgcctgcccaaaattggatattttgggttcaaaattctcatctagcaatatgcattgtgaatatatattaaaatgcactatgc |
36684137 |
T |
|
| Q |
557 |
ccaaatcgcatgtatgatgtagccatgataaccctcttgctattccaagtgcaatgtt |
614 |
Q |
| |
|
||||||| || ||||||| ||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
36684138 |
ccaaatcacagctatgatggagccatgataatcctcttgctaatccaagtgcaatgtt |
36684195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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