View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13500_low_3 (Length: 602)
Name: NF13500_low_3
Description: NF13500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13500_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 235 - 587
Target Start/End: Original strand, 56319651 - 56320003
Alignment:
| Q |
235 |
tttttaagtgaataaagatcaatgcttccatccgagccaactctcagtgaataaatatagttcgttactaactactattcattttagaggagccaaatca |
334 |
Q |
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| T |
56319651 |
tttttaagtgaataaagatcaatgactccatccgagccaactctcagtgaataaatatagttcgttactaactactattcattttagaggagccaaatca |
56319750 |
T |
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| Q |
335 |
atggtagatatatactcctttgatttgctaagttcttcaacaacagtcattcatatattttcaccgacctctcagtaaaatgttacttactagtgcaatt |
434 |
Q |
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| T |
56319751 |
atggtagatatatactcctttgatttgctaagttcttcaacaacagtcattcatatattttcaccgacctctcagtaaaatgttacttactagtgcaatt |
56319850 |
T |
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| Q |
435 |
aaaaagtaactagcacagaaagttacatgcaaattagatcctgctatctcgactagttagcatgaacttttctaacaccacaaagtggtacggcgttgct |
534 |
Q |
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| T |
56319851 |
aaaaagtaactagcacagaatgttacatgcaaattagatcctgctatctcgactagttagcatgaacttttctaacaccacaaagtggtacggcgctgct |
56319950 |
T |
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| Q |
535 |
ttgatttagattgttgatttgaaagaaaacgctacaatatgggatttgtttgt |
587 |
Q |
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| T |
56319951 |
ttgatttagattgttgatttgaaagaaaacgctacaatatgggatttgtttgt |
56320003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 56318906 - 56319146
Alignment:
| Q |
1 |
atagtctattattcgtgacatttaatcccagcaaaatttgaatttagtctctcttttt--gttgtagatagataaaatgacaataatcattagaaattca |
98 |
Q |
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| T |
56318906 |
atagtctattattcgtgacatttaatcccaacaaaatttgaatttagtctttttttttttgttgtagatagataaaatgacaataatcattagaaattca |
56319005 |
T |
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| Q |
99 |
ctggaattagaac-tcgatgatcacatcgtctcatttgtggactattatatactaagattaggtcatttggtttgaatnnnnnnnnttaaaagtataaac |
197 |
Q |
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| T |
56319006 |
caggaattagaacctcgatgatcacatcgtctgatttgtggactattatatactaatattaggtcatttggtttgaataaaaaaaattaaaagtataaac |
56319105 |
T |
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| Q |
198 |
agtagaacgaacgctagccgcatatatataaatatagtttt |
238 |
Q |
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| T |
56319106 |
agtagaacgaacgctagccgcatatatataaataaagtttt |
56319146 |
T |
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