View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13500_low_4 (Length: 495)
Name: NF13500_low_4
Description: NF13500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13500_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 20 - 486
Target Start/End: Original strand, 40276325 - 40276791
Alignment:
| Q |
20 |
ccgacacaacgcctgcaatggctttcggtgaaccggcatcagatgcattgttaggagaatcatcgaacaaagttttcgcttcataatcaccatccacatt |
119 |
Q |
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| T |
40276325 |
ccgacacaacgcctgcaatggctttcggtgaaccggcatcagatgcattgttaggagaatcatcgaacaaagttttcgcttcataatcaccatccacatt |
40276424 |
T |
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| Q |
120 |
attggcaatttggatattattagaactattagaatgaggaagccgcgcttgaagatcttgaaggaaacgaagaaagaaagggtttgtggaattaatcata |
219 |
Q |
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| T |
40276425 |
attggcaatttggatattattagaactattagaatgaggaagccgcgcttgaagatcttgaaggaaacgaagaaagaaagggtttgtggaattaatcata |
40276524 |
T |
|
| Q |
220 |
agcacttcattggaagtgataattgcttgaatgtgttctaagttaacgacaatagctttttctcgtcctaagatagaagaagggttagagagttttggat |
319 |
Q |
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| T |
40276525 |
agcacttcattggaagtgataattgcttgaatgtgttctaagttaacgacaatagctttttctcgtcctaagatagaagaagggttagagagttttggat |
40276624 |
T |
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| Q |
320 |
caagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgtgattcacctgtctctgatactaccat |
419 |
Q |
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| T |
40276625 |
caagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatggagtgtttgtcaatatcttcaacgcgtgattcacctgtctctgatactaccat |
40276724 |
T |
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| Q |
420 |
ccaactcttcacgaccattacagtaccctttcgtcgacaccctcctctcattgctgtcgttaccacc |
486 |
Q |
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| T |
40276725 |
ccaactcttcaccaccattacagtaccctttcgtcgacaccctcctctcattgctgtcgttaccacc |
40276791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 168 - 428
Target Start/End: Original strand, 39625193 - 39625453
Alignment:
| Q |
168 |
ttgaagatcttgaaggaaacgaagaaagaaagggtttgtggaattaatcataagcacttcattggaagtgataattgcttgaatgtgttctaagttaacg |
267 |
Q |
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||||||||||||||| || |||| ||||||||||| | ||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| |
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| T |
39625193 |
ttgaagatcttgaagaaagcgaataaagaaagggtcaattgaattaatcataagcacttcattcgaagtgataatcgctctaatgtgttctaagttaaca |
39625292 |
T |
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| Q |
268 |
acaatagctttttctcgtcctaagatagaagaagggttagagagttttggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatgg |
367 |
Q |
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| T |
39625293 |
ataatggctttttctcgtcctaagatagaagaaggctgagaaagctttgtatcaaagactctaaggtcacgtgcaggtaaacctgttcgtcgcatgatgg |
39625392 |
T |
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| Q |
368 |
agtgtttgtcaatatcttcaacgcgtgattcacctgtctctgatactaccatccaactctt |
428 |
Q |
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| T |
39625393 |
agtgtttgtcgatatcctcgacacgtgattcacctgtttcaaatactaccatccaactctt |
39625453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 168 - 428
Target Start/End: Original strand, 39634743 - 39635003
Alignment:
| Q |
168 |
ttgaagatcttgaaggaaacgaagaaagaaagggtttgtggaattaatcataagcacttcattggaagtgataattgcttgaatgtgttctaagttaacg |
267 |
Q |
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||||||||||||||| || |||| ||||||||||| | ||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| |
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| T |
39634743 |
ttgaagatcttgaagaaagcgaataaagaaagggtcaattgaattaatcataagcacttcattcgaagtgataatcgctctaatgtgttctaagttaaca |
39634842 |
T |
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| Q |
268 |
acaatagctttttctcgtcctaagatagaagaagggttagagagttttggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatgg |
367 |
Q |
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| ||| ||||||||||||||||||||||||||||| | ||| || |||| ||||| ||||||||||||| | |||||| ||||||||| ||||||||| |
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| T |
39634843 |
ataatggctttttctcgtcctaagatagaagaaggctgagaaagctttgtatcaaagactctaaggtcacgtgcaggtaaacctgttcgtcgcatgatgg |
39634942 |
T |
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| Q |
368 |
agtgtttgtcaatatcttcaacgcgtgattcacctgtctctgatactaccatccaactctt |
428 |
Q |
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|||||||||| ||||| || || |||||||||||||| || ||||||||||||||||||| |
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| T |
39634943 |
agtgtttgtcgatatcctcgacacgtgattcacctgtttcaaatactaccatccaactctt |
39635003 |
T |
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