View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13500_low_5 (Length: 485)

Name: NF13500_low_5
Description: NF13500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13500_low_5
NF13500_low_5
[»] chr4 (1 HSPs)
chr4 (89-469)||(39932921-39933298)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 89 - 469
Target Start/End: Complemental strand, 39933298 - 39932921
Alignment:
Q  89 tcatctgtgacagatactgaggtctgatccaatagaaacagaggaagctgtgttgctattacctccattctcaatccccaactcaacttctccatctcaa 188  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39933298 tcatctgtgacagatactgaggtctgatccaattgaaacagaggaagctgtgttgctattacctccattctcaatccccaactcaacttctccatctcaa 39933199  T
Q  189 atgacctaattgtatatttcattttgaaacttctaaccactctatgcccacgttaaatatttgtttcttctttctgttttagacaatggaa-nnnnnnnn 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||             
T  39933198 atgacctaattgtatatttcattttgaaacttctaaccactctatgcccatgttaaatatttgtttcttc--tctgttttagacaatggaattttgattt 39933101  T
Q  288 nnnnnnnnnnnnagctcttcactcagaaacctatctcttaaaatgttatttttactgcactgtattaattgtcttttactgaatgtgaatttcacttttg 387  Q
                |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||    
T  39933100 ttttagtgttttagctcttcactcagaaacctatctcttaaaatgttatttttactg--ctgtattaattgtcttttactgaatgtgaatttcagttttg 39933003  T
Q  388 ttagttgttagcatatttggccttggattgatgctttgagtggattatattttacttgcttaatactgcattaggtaattgg 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39933002 ttagttgttagcatatttggccttggattgatgctttgagtggattatattttacttgcttaatactgcattaggtaattgg 39932921  T

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