View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13500_low_6 (Length: 367)

Name: NF13500_low_6
Description: NF13500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13500_low_6
NF13500_low_6
[»] chr2 (18 HSPs)
chr2 (11-352)||(32310798-32311158)
chr2 (183-352)||(28213869-28214038)
chr2 (157-352)||(28222246-28222436)
chr2 (11-160)||(28213660-28213809)
chr2 (93-352)||(32799249-32799525)
chr2 (11-181)||(28222444-28222616)
chr2 (232-352)||(32792737-32792857)
chr2 (232-352)||(32306668-32306788)
chr2 (232-352)||(32786354-32786474)
chr2 (232-352)||(32563903-32564022)
chr2 (265-352)||(32813598-32813685)
chr2 (33-220)||(32813371-32813573)
chr2 (68-153)||(32563749-32563836)
chr2 (59-153)||(32792594-32792690)
chr2 (98-147)||(32785122-32785171)
chr2 (11-43)||(32790307-32790339)
chr2 (19-64)||(32799198-32799243)
chr2 (95-127)||(28211804-28211836)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 32311158 - 32310798
Alignment:
Q  11 cacagaagcagttgtgacttgcaatatcatatcatagaattattcctagatctcaagttgtaagagttgaatagggagcttg--caaaaatatacttcaa 108  Q
    |||||||||||||||||||||||||||||||||  ||||| |||  | |||||| | ||||||||||||||||||||||||   ||||||||||||||||    
T  32311158 cacagaagcagttgtgacttgcaatatcatatctaagaatcatttattgatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaa 32311059  T
Q  109 taccttggaatccaagttttattaaggcataacaaaacactttgaatt----------attgcagccttgcaacactagactaaacattt---aacacag 195  Q
    ||||||||||||||||||||| |||  ||||||| |||||||||| ||          |||||||||||||||||||| | |||||||||   ||| |||    
T  32311058 taccttggaatccaagttttaataaaacataacagaacactttgacttgtttatatttattgcagccttgcaacactaaagtaaacatttttcaacccag 32310959  T
Q  196 caccatcaaaatttataaattctgtcaaca--tttaac---acatggccaaaactaccatcaaatgtgtgtgagaaacttacataggaagagaacaaatt 290  Q
      ||||||||||  ||||||||||| ||||  | | ||   ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  32310958 tgccatcaaaatcaataaattctgt-aacagctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagagaacaaatt 32310860  T
Q  291 tgctaaaccagaatgaaatatatgaaccaactcgcttaagagcttacgagacgggagcaatt 352  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  32310859 tgctaaactagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaatt 32310798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 183 - 352
Target Start/End: Original strand, 28213869 - 28214038
Alignment:
Q  183 acatttaacacagcaccatcaaaatttataaattctgtcaacatttaacacatggccaaaactaccatcaaatgtgtgtgagaaacttacataggaagag 282  Q
    ||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  28213869 acatttaacacagtaccatcaaaatctataaattctgtaaacatttaacacatggccaaaactaccctcaaatgtgtgtgagaaacttacataagaagag 28213968  T
Q  283 aacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaagagcttacgagacgggagcaatt 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28213969 aacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaagagcttacgacacgggagcaatt 28214038  T

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Target: chr2; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 157 - 352
Target Start/End: Complemental strand, 28222436 - 28222246
Alignment:
Q  157 attgcagccttgcaacactagactaaacatttaacacagcaccatcaaaatttataaattctgtcaacatttaacacatggccaaaactaccatcaaatg 256  Q
    ||||||||||||||| |||||||     ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||    
T  28222436 attgcagccttgcaatactagac-----atttaacacagtaccatcaaaatctataaattctgtaaacatttaacacatggctaaaactaccatcaaatg 28222342  T
Q  257 tgtgtgagaaacttacataggaagagaacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaagagcttacgagacgggagcaatt 352  Q
    ||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28222341 tgtgtaagaaacttacataggaagagaaccaatttgctaagccagaatgaaatatatgaaccaactcgcttaagagcttacgacacgggagcaatt 28222246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 28213660 - 28213809
Alignment:
Q  11 cacagaagcagttgtgacttgcaatatcatatcatagaattattcctagatctcaagttgtaagagttgaatagggagcttgcaaaaatatacttcaata 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| ||||||||||||||||||    
T  28213660 cacagaagcagttgtgacttgcaatatcatatcatagaattattccaagatctctaattgtaagagttgaatagggagcttacaaaaatatacttcaata 28213759  T
Q  111 ccttggaatccaagttttattaaggcataacaaaacactttgaattattg 160  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  28213760 ccttggaatccaagttttattaaggcataacagaacactttgatttattg 28213809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 93 - 352
Target Start/End: Original strand, 32799249 - 32799525
Alignment:
Q  93 caaaaatatacttcaataccttggaatccaagttttattaaggcataacaaaacactttgaatt----------attgcagccttgcaacactagactaa 182  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||| | |||||||||| ||          |||||||||||||||||||||| |||    
T  32799249 caaaaatatacttcaataccttggaatctaagttttaataaggcataaaagaacactttgatttgttgatatttattgcagccttgcaacactagagtaa 32799348  T
Q  183 acat---ttaacacagcaccatcaaaatttataaattctgtca-acatttaac---acatggccaaaactaccatcaaatgtgtgtgagaaacttacata 275  Q
    ||||   |||| ||||  |||  |||||||||||||||| | | |  | | ||   ||||||||||||||||| | |||||||| |||||||||||||||    
T  32799349 acatattttaaaacagtgccacaaaaatttataaattctataatagctgtcactttacatggccaaaactaccctaaaatgtgtatgagaaacttacata 32799448  T
Q  276 ggaagagaacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaagagcttacgagacgggagcaatt 352  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  32799449 ggaagagaacaaatttgctaaactagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaatt 32799525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 28222616 - 28222444
Alignment:
Q  11 cacagaagcagttgtgacttgcaatatcatatcatagaattattcctagatctcaagttgtaagagttgaatagggagcttg--caaaaatatacttcaa 108  Q
    ||||||||||| ||||||||| | |||||||||  ||||| |||||| |||||  | ||||||||||||||||||||||||   ||||||||||||||||    
T  28222616 cacagaagcagctgtgacttgtattatcatatctaagaatgattccttgatctataattgtaagagttgaatagggagcttatacaaaaatatacttcaa 28222517  T
Q  109 taccttggaatccaagttttattaaggcataacaaaacactttgaattattgcagccttgcaacactagacta 181  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  28222516 taccttggaatccaagttttattaaggcataacagaacactttgatttattgcagccttgcaacactagacta 28222444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 232 - 352
Target Start/End: Original strand, 32792737 - 32792857
Alignment:
Q  232 acatggccaaaactaccatcaaatgtgtgtgagaaacttacataggaagagaacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaaga 331  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||    
T  32792737 acatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagagaacaaatttgataaactagaatgaaatatatgaaccaactcacttaaga 32792836  T
Q  332 gcttacgagacgggagcaatt 352  Q
    |||||| ||||||||||||||    
T  32792837 gcttacaagacgggagcaatt 32792857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 232 - 352
Target Start/End: Complemental strand, 32306788 - 32306668
Alignment:
Q  232 acatggccaaaactaccatcaaatgtgtgtgagaaacttacataggaagagaacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaaga 331  Q
    ||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  32306788 acatggccaaaactaccctaaaatgtgtatgagaaacttacataggaagagaacaaatttgctaaactagaatgaaatatatgaaccaactcacttaaga 32306689  T
Q  332 gcttacgagacgggagcaatt 352  Q
    | |||| ||||||||||||||    
T  32306688 gtttacaagacgggagcaatt 32306668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 232 - 352
Target Start/End: Original strand, 32786354 - 32786474
Alignment:
Q  232 acatggccaaaactaccatcaaatgtgtgtgagaaacttacataggaagagaacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaaga 331  Q
    ||||||||||||| ||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  32786354 acatggccaaaaccaccctaaaatatgtgtgagaaacttacataggaagagaacaaatttgctaaaccagaatgaaatatatgaaccgactcacttaaga 32786453  T
Q  332 gcttacgagacgggagcaatt 352  Q
    |||||| ||| ||||||||||    
T  32786454 gcttacaagatgggagcaatt 32786474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 232 - 352
Target Start/End: Original strand, 32563903 - 32564022
Alignment:
Q  232 acatggccaaaactaccatcaaatgtgtgtgagaaacttacataggaagagaacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaaga 331  Q
    ||||||||||||||||| |||||||||| |||||||||||||| |||| | ||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  32563903 acatggccaaaactaccctcaaatgtgtatgagaaacttacattggaaaa-aacaaattttctaaaccagaatgaaatatatgaaccaactcacttaaga 32564001  T
Q  332 gcttacgagacgggagcaatt 352  Q
    |||||| ||||||||||||||    
T  32564002 gcttacaagacgggagcaatt 32564022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 265 - 352
Target Start/End: Original strand, 32813598 - 32813685
Alignment:
Q  265 aaacttacataggaagagaacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaagagcttacgagacgggagcaatt 352  Q
    |||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||    
T  32813598 aaacttgcataggaagagaacaaattttctaaaccagaatgaattatatgaaccaactcacttaagagcttacaagacgggagcaatt 32813685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 33 - 220
Target Start/End: Original strand, 32813371 - 32813573
Alignment:
Q  33 aatatcatatcatagaattattcctagatctcaagttgtaagagttgaatagggagcttg--caaaaatatacttcaataccttggaatccaagttttat 130  Q
    |||||||||||  ||||| |||  | |||||| | ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||     
T  32813371 aatatcatatctaagaatcatttattgatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagttttaa 32813470  T
Q  131 taaggcataacaaaacactttg----------aattattgcagccttgcaacactagactaaaca---tttaacacagcaccatcaaaatttataaattc 217  Q
    |||  ||||||| |||||||||          | |||||||||||||||||||||| | ||||||   ||||||||||  ||||||||||  ||||||||    
T  32813471 taaaacataacagaacactttgatttgtttatatttattgcagccttgcaacactaaagtaaacagtttttaacacagttccatcaaaatcaataaattc 32813570  T
Q  218 tgt 220  Q
    |||    
T  32813571 tgt 32813573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 32563749 - 32563836
Alignment:
Q  68 ttgtaagagttgaatagggagcttgcaaaa--atatacttcaataccttggaatccaagttttattaaggcataacaaaacactttga 153  Q
    ||||||||| ||||||||||||||  ||||  |||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||    
T  32563749 ttgtaagagctgaatagggagcttataaaaaaatatacttcaataccttggaatccaagttttaataaagcataacagaacactttga 32563836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 153
Target Start/End: Original strand, 32792594 - 32792690
Alignment:
Q  59 gatctcaagttgtaagagttgaatagggagcttg--caaaaatatacttcaataccttggaatccaagttttattaaggcataacaaaacactttga 153  Q
    |||||| | ||||||||||| |||| |||||||   ||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||    
T  32792594 gatctctaattgtaagagttcaatacggagcttatacaaaaatatacttcaataccttggaatccaagttttaataaagcataacagaacaatttga 32792690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 32785122 - 32785171
Alignment:
Q  98 atatacttcaataccttggaatccaagttttattaaggcataacaaaaca 147  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  32785122 atatacttcaataccttggaatccaagttttaataaggcataacagaaca 32785171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 32790307 - 32790339
Alignment:
Q  11 cacagaagcagttgtgacttgcaatatcatatc 43  Q
    |||||||||||||||||||||||||||||||||    
T  32790307 cacagaagcagttgtgacttgcaatatcatatc 32790339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 32799198 - 32799243
Alignment:
Q  19 cagttgtgacttgcaatatcatatcatagaattattcctagatctc 64  Q
    |||||||||||||||||||||||||  ||||| |||||| ||||||    
T  32799198 cagttgtgacttgcaatatcatatctaagaatcattccttgatctc 32799243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 28211804 - 28211836
Alignment:
Q  95 aaaatatacttcaataccttggaatccaagttt 127  Q
    |||||| ||||||||||||||||||||||||||    
T  28211804 aaaatacacttcaataccttggaatccaagttt 28211836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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