View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13501_high_2 (Length: 625)
Name: NF13501_high_2
Description: NF13501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13501_high_2 |
 | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 603
Target Start/End: Complemental strand, 33543029 - 33542431
Alignment:
| Q |
1 |
tcaattctcttatgagaagcacgcttttatagtctatttttgagtatataagaggtgcattgagagaccattgttcaaaattatttatatatattttgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33543029 |
tcaattctcttatgagaagcacgcttttatagtctatttttgagtatataagaggtgcattgagagaccatttctcaaaattatttatatatattttgtg |
33542930 |
T |
|
| Q |
101 |
attatgagtttaaactttcttggacttttctatnnnnnnnnnnnntttattggaaaatgtacattgattaaagtacgcaatttacataatgaaaatcgcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33542929 |
attatgagtttaaactttcttggacttttctataaaaaaaac---tttattggaaaatgtacattgattaaagtacgcaatttacataatgaaaatcgcc |
33542833 |
T |
|
| Q |
201 |
tatacttaactaaaagttaaagtcattagtttttt-atcatctnnnnnnnn-ctaagatttaagatataattagttacaataatttgttacgctagttag |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33542832 |
tatacttaactaaaagttaaagtcattagtttttttatcatctaaaaaaaaactaagatttaagatataattagttacaataatttgttacgctagatag |
33542733 |
T |
|
| Q |
299 |
ttaagttacactagttagttgctcattggctatataagcggnnnnnnnaagagcttaaattagattaccaaagagcttagattttcgagcacaaagcgtg |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
33542732 |
ttaagttacactagttagttgctcattggctatataagcggttttt--aagagcttaaattagattaccaaagagcttcgattttcgagcacaaag-gtt |
33542636 |
T |
|
| Q |
399 |
ccaaaaaataaggctaagtcaacaaattagtaagtccaagaaggagctaaaaggagaaagatagatacaaattaagtaattgctttcaagaataattttg |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33542635 |
ccaaaaaataaggctaagtcaacaaattagtaagtccaaaaaggagctaaaaggagaaagatagatacaaattaagtaattgctttcaagaataattttg |
33542536 |
T |
|
| Q |
499 |
gattaaaccactaagaatggtaattaaaagagaaagtagcgtaattcactttcaaccactaaaacgttgaagcttaattttgccaagcatcttaaataaa |
598 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33542535 |
gattaagccactaagaatggtaattaaaagagaaagtagcgtagttcactttcaaccactaaaacgttgaagcttaattttgccaagcatcttaaataaa |
33542436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 33361993 - 33362331
Alignment:
| Q |
1 |
tcaattctcttatgagaagcacgcttttatagtctatttttgagtatataagaggtgcattgagagaccattgttcaaaattatttatatatattttgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33361993 |
tcaattctcttatgagaagcacgcttttatagtctatttttgagcatataagaggtgcattgagagaccatttctcaaaattatttatatatattttgtg |
33362092 |
T |
|
| Q |
101 |
attatgagtttaaactttcttggacttttctatnnnnnnnnnnnntttattggaaaatgtacattgattaaagtacgcaatttacataatgaaaatcgcc |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33362093 |
attatgagtttaaactttgttggacttttccataaaaaaaaaaactttgttggaaaatgtacattgattaaagtacgcaatttacataatgaaaatcgcc |
33362192 |
T |
|
| Q |
201 |
tatacttaactaaaagttaaagtcattag-ttttttatcatctnnnnnnnnctaagatttaagatataattagttacaataatttgttacgctagttagt |
299 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33362193 |
tatacttaactaaaagttaaagtgattagtttttttatcatcttaaaaaaactaagatttaagatataattagttacaataatttgttacgctagttact |
33362292 |
T |
|
| Q |
300 |
taagttacactagttagttgctcattggctatataagcg |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33362293 |
taagttacactagttagttgctcattggctctataagcg |
33362331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 469 - 563
Target Start/End: Complemental strand, 23425144 - 23425051
Alignment:
| Q |
469 |
attaagtaattgctttcaagaataattttggattaaaccactaagaatggtaattaaaagagaaagtagcgtaattcactttcaaccactaaaac |
563 |
Q |
| |
|
|||||||||| ||||||||| ||| ||||||||||| |||| |||| || || |||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
23425144 |
attaagtaatagctttcaagcatacttttggattaagccaccaagagtga-aaccaaaagagaaagtagtgtaattcactttcaaccaccaaaac |
23425051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 467 - 557
Target Start/End: Complemental strand, 4054722 - 4054632
Alignment:
| Q |
467 |
aaattaagtaattgctttcaagaataattttggattaaaccactaagaatggtaattaaaagagaaagtagcgtaattcactttcaaccac |
557 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||||| || || |||||||||||||||| |||| | ||||||| ||||||||||| |
|
|
| T |
4054722 |
aaattaagtaataacttacaagcataattttggattaaatcatcaaaaatggtaattaaaagataaagcattgtaattcgctttcaaccac |
4054632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 447 - 603
Target Start/End: Complemental strand, 1300986 - 1300829
Alignment:
| Q |
447 |
aaaaggagaaagatagatacaaattaagtaattgctttcaagaataattttggattaaaccactaagaatggtaattaaaagagaaagtagcgtaattca |
546 |
Q |
| |
|
||||||||||||| ||||||||| |||||||| ||||||||| |||| |||||||||| |||| |||||||||||| |||||||||||||| ||| || | |
|
|
| T |
1300986 |
aaaaggagaaagaaagatacaaactaagtaatagctttcaagcataagtttggattaagccaccaagaatggtaatcaaaagagaaagtagagtacttta |
1300887 |
T |
|
| Q |
547 |
ctttcaaccactaaaacg-ttgaagcttaattttgccaagcatcttaaataaagagtg |
603 |
Q |
| |
|
||||||||||| |||| | ||||||||||||||| ||| | ||||||||||||||| |
|
|
| T |
1300886 |
ctttcaaccaccaaaaagtttgaagcttaattttattaagtagcttaaataaagagtg |
1300829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 357 - 587
Target Start/End: Original strand, 1048956 - 1049187
Alignment:
| Q |
357 |
attagattaccaaagagcttagattttcgagcacaaagcgtgccaaaaaataaggctaagtcaacaaattagtaagtccaagaaggagctaaaaggagaa |
456 |
Q |
| |
|
|||||| ||||| | ||| |||||||| ||||||| | | ||| ||||||||||||||||||||| || ||||||| || | |||||||||| |
|
|
| T |
1048956 |
attagaataccataaagcctagatttttcagcacaaggtgcaccagaaaataaggctaagtcaacaagatacaaagtccataaaccgaccaaaaggagaa |
1049055 |
T |
|
| Q |
457 |
agatagatacaaattaagtaattgctttcaagaataattttggattaaaccactaagaatggtaattaaaagagaaagtagcgtaattcactttcaacca |
556 |
Q |
| |
|
||| |||| || |||||||||| ||| ||||| |||| |||| ||||| ||| ||||||| |||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
1049056 |
agaaagatgcatattaagtaatagctgtcaagtataagtttgtattaagccaacaagaatgataatcaaaagagaaagtagcgtacttcactttcaacca |
1049155 |
T |
|
| Q |
557 |
ctaaaacgt-tgaagcttaattttgccaagca |
587 |
Q |
| |
|
| ||||| | ||||||||||||||| |||||| |
|
|
| T |
1049156 |
ccaaaacatctgaagcttaattttgtcaagca |
1049187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 451 - 603
Target Start/End: Original strand, 1075937 - 1076090
Alignment:
| Q |
451 |
ggagaaagatagatacaaattaagtaattgctttcaagaataattttggattaaaccactaagaatggtaattaaaagagaaagtagcgtaattcacttt |
550 |
Q |
| |
|
||||||||| | ||||||| |||||||| ||||| ||| |||| ||||||||||||||| || ||||||||| ||||||||| |||| ||| || ||||| |
|
|
| T |
1075937 |
ggagaaagaaatatacaaactaagtaatagctttaaagcataagtttggattaaaccaccaaaaatggtaatcaaaagagaaggtagagtactttacttt |
1076036 |
T |
|
| Q |
551 |
caacca-ctaaaacgttgaagcttaattttgccaagcatcttaaataaagagtg |
603 |
Q |
| |
|
|||||| | |||| |||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
1076037 |
caaccaccaaaaaatttgaagcttaattttgttaagcagcttaaataaagagtg |
1076090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 511 - 579
Target Start/End: Original strand, 19217101 - 19217169
Alignment:
| Q |
511 |
aagaatggtaattaaaagagaaagtagcgtaattcactttcaaccactaaaacgttgaagcttaatttt |
579 |
Q |
| |
|
||||||| |||| |||| |||||||| |||||||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
19217101 |
aagaatgataatcaaaaaagaaagtaacgtaattcactttcaaccaccaaaagtttgtagcttaatttt |
19217169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 503 - 605
Target Start/End: Complemental strand, 91428 - 91325
Alignment:
| Q |
503 |
aaaccactaagaatggtaattaaaagagaaagtagcgtaattcactttcaaccactaaaacgt-tgaagcttaattttgccaagcatcttaaataaagag |
601 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||| | ||| ||||||| ||| ||||||| |||| |||||||||| ||| || ||||||||||||| |
|
|
| T |
91428 |
aaaccaccaagaatggtaatcaaaagagaaagtagcacacttcgctttcaatcaccaaaacgtctgaaacttaattttgtcaaacaccttaaataaagag |
91329 |
T |
|
| Q |
602 |
tgct |
605 |
Q |
| |
|
|||| |
|
|
| T |
91328 |
tgct |
91325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 603
Target Start/End: Original strand, 34051252 - 34051500
Alignment:
| Q |
357 |
attagattaccaaagagcttagattttcgagcacaaagcgtgccaaaaaataagg-ctaagtcaacaaattagtaagtccaagaaggagctaaaaggaga |
455 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||||| ||||||||||| ||| ||||||||| || || |||| ||| |||| | | ||||||| |
|
|
| T |
34051252 |
attagattaccaaagagcctagactttttagcacaagatgtgccaaaaaaagaggactaagtcaaaaagttgcaaagtgcaaaaagggaccataaggaga |
34051351 |
T |
|
| Q |
456 |
aagatagatacaaattaagtaattgctttcaagaataattttggattaaaccactaagaatggtaattaaaagagaaagtagcgtaattcactttcaacc |
555 |
Q |
| |
|
|||| ||||||||| | || ||| |||||||| ||||||||||||||| | || |||||| ||||| | |||||||||| |||||| |||||||| |
|
|
| T |
34051352 |
aagaaagatacaaaatgagcaataactttcaagcataattttggattaagctaccaagaatagtaatcagaagagaaagttagataattcgttttcaacc |
34051451 |
T |
|
| Q |
556 |
actaaaacgt-tgaagcttaattttgccaagcatcttaaataaagagtg |
603 |
Q |
| |
|
|| |||| || | ||| ||||| ||| ||||| ||||||||||||||| |
|
|
| T |
34051452 |
accaaaatgtctaaaggttaatcttgtcaagccgcttaaataaagagtg |
34051500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 491 - 553
Target Start/End: Original strand, 14805593 - 14805655
Alignment:
| Q |
491 |
taattttggattaaaccactaagaatggtaattaaaagagaaagtagcgtaattcactttcaa |
553 |
Q |
| |
|
|||||||||||||||||| ||||||||| || ||||||||||||||| |||||||||||||| |
|
|
| T |
14805593 |
taattttggattaaaccaacaagaatggttataaaaagagaaagtagcttaattcactttcaa |
14805655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 10909821 - 10909784
Alignment:
| Q |
269 |
ttagttacaataatttgttacgctagttagttaagtta |
306 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
10909821 |
ttagttacaataattagttacactagttagttaagtta |
10909784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 467 - 557
Target Start/End: Original strand, 25069085 - 25069175
Alignment:
| Q |
467 |
aaattaagtaattgctttcaagaataattttggattaaaccactaagaatggtaattaaaagagaaagtagcgtaattcactttcaaccac |
557 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||||| || || |||||||||||||||| |||| | ||||||| ||||||||||| |
|
|
| T |
25069085 |
aaattaagtaataacttacaagcataattttggattaaatcatcaaaaatggtaattaaaagataaagcattgtaattcgctttcaaccac |
25069175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 557
Target Start/End: Complemental strand, 793774 - 793684
Alignment:
| Q |
467 |
aaattaagtaattgctttcaagaataattttggattaaaccactaagaatggtaattaaaagagaaagtagcgtaattcactttcaaccac |
557 |
Q |
| |
|
|||||||||||| ||| |||| ||||||||||||||| || || ||||||||| |||||| |||| | |||||||| ||||||||||| |
|
|
| T |
793774 |
aaattaagtaataacttacaagcataattttggattaagtcatcaaaaatggtaatcaaaagaaaaagcatcgtaattcgctttcaaccac |
793684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 13725608 - 13725645
Alignment:
| Q |
269 |
ttagttacaataatttgttacgctagttagttaagtta |
306 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
13725608 |
ttagttacaataattagttacactagttagttaagtta |
13725645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 312
Target Start/End: Complemental strand, 37977836 - 37977793
Alignment:
| Q |
269 |
ttagttacaataatttgttacgctagttagttaagttacactag |
312 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
37977836 |
ttagttacaataattagttacaatagttagttaagttacactag |
37977793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 557
Target Start/End: Complemental strand, 12525457 - 12525371
Alignment:
| Q |
471 |
taagtaattgctttcaagaataattttggattaaaccactaagaatggtaattaaaagagaaagtagcgtaattcactttcaaccac |
557 |
Q |
| |
|
|||||||| ||| |||| ||||||||||||||| || || ||||||||| ||||||||||| | |||||||| |||| |||||| |
|
|
| T |
12525457 |
taagtaataacttacaagcataattttggattaagtcatcaaaaatggtaatcaaaagagaaagcatcgtaattcgctttgaaccac |
12525371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University