View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13501_high_3 (Length: 624)
Name: NF13501_high_3
Description: NF13501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13501_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 13 - 605
Target Start/End: Original strand, 53558459 - 53559051
Alignment:
| Q |
13 |
aagaatatgaactaggttatggtctgtagtactaaattaatcatatgtatttaaccttctggtttattctaatttgttgccttgtttgatcataagaatg |
112 |
Q |
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| T |
53558459 |
aagattatgaactaggttatggtctgtagtactaaattaatcatatgtatttaaccttctgctttattctaatctgttgccttgtttgatcataaggatg |
53558558 |
T |
|
| Q |
113 |
atgagttgtaactgctgcaggtcttggaaacaatgtcatgaatatatattatataataatgtacattgatgcttgagtaatattttcttaattatatgca |
212 |
Q |
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| T |
53558559 |
atgagttgtaactgctgcaggtcttgtaaacaatgtcatgaatatatattatataataatgtacatcgatgcttgagtaatattttcttaattatatgca |
53558658 |
T |
|
| Q |
213 |
aatgttagtaagttagttaccttggaatctcttgttcttggggtgtatgagtatgaggtagctcctctaaagtggttatcgttgacaaaaaagaatatgc |
312 |
Q |
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| T |
53558659 |
aatgttagcaagttagttaccttagaatctcttgttcttggggtgtatgagtatgaggtagctcctctaaagtggttatcgttgacaaaaaagaacatgc |
53558758 |
T |
|
| Q |
313 |
atgaactttttgaaatttgcaatgaaagtattaaaaaatctttcataatatcactcaaagataaaaccatattgaaactcaaagatcaatgttcaaataa |
412 |
Q |
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| T |
53558759 |
atgaactttttgaaatttgcaatgaaagtattaaaaaatctttcaaaataccactcaaagataaaaccatattgaaactcaaagatcaatgttcaaataa |
53558858 |
T |
|
| Q |
413 |
aaattaggaaaaacataagtcttaaattacactctcgactcttgaaccccaagtttcgtaattgtgcaattttgtttccacaaatttaaaataagcgatt |
512 |
Q |
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| T |
53558859 |
aaattaggaaaaacacaagtcttaaattacactctcgactcttgaacctcaagtttcgtaattgtgcaattttgtttccacaaatttaaaataagcgatt |
53558958 |
T |
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| Q |
513 |
tatttaatctcttttacatttattagtcctcatacacattttgagtaagattcatnnnnnnnncactgaggtgactaaatttaataatgtggc |
605 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||||||||||| ||| |||||||||| |
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| T |
53558959 |
tatttaacctcttttacatttattagtcctaatacacattttgagtaacattcataaaaaaaacaccgaggtgactaattttgataatgtggc |
53559051 |
T |
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