View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13501_high_4 (Length: 582)
Name: NF13501_high_4
Description: NF13501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13501_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 544; Significance: 0; HSPs: 18)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Complemental strand, 23258179 - 23257608
Alignment:
| Q |
1 |
tatgacatgtcaactccgaatttggaggtacgattagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23258179 |
tatgacatgtcaactccgaattcggaggtacgattagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgt |
23258080 |
T |
|
| Q |
101 |
atagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaacccaacacaaagaccaggatttggctagggacttttccaacacccga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23258079 |
atagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaacccaacacaaagaccaggatttggctggggacttttccaacacccga |
23257980 |
T |
|
| Q |
201 |
aatggcagcccgagcccacgatgttgccgcaatggcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcggcttcctattccagta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
23257979 |
aatggcagcccgagcccacgatgttgccgcaatggcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcgccttcctattccagca |
23257880 |
T |
|
| Q |
301 |
acttccgcgataaaagatattcaaaaggcggctgctgaagctgccgaagcttttagaccagacaagactttaatgattaatgatattgacaccgtcgtac |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23257879 |
acttccgcgataaaagatattcaaaaggcggctgctgaagctgccgaagcttttagaccagacaagactttaatgattaatgatattgacaccgtagtac |
23257780 |
T |
|
| Q |
401 |
ctgtcgcggccacaaaggagttgaatatgttttgtgtggaagtcgaagaagagcaggaaatgttgaatatgccagaattgttgaggaatatggcactaat |
500 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23257779 |
ctgtcgtggccacaaaggagttgaatatgttttgtgtggaagtcgaagaagagcaggaaatgttgaatatgccagaattgttgaggaatatggcactaat |
23257680 |
T |
|
| Q |
501 |
gtcccctacgcatagctttgagtatcatgatcagtatgaagatattcatgtacaagactttcaagatgatga |
572 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23257679 |
gtcccctacacatagctttgagtatcatgatcagtatgaagatattcatgtacaagactttcaagatgatga |
23257608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 24 - 572
Target Start/End: Complemental strand, 23266711 - 23266169
Alignment:
| Q |
24 |
ggaggtacgattagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaac |
123 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
23266711 |
ggagatacgattagcagctagtaacccgaagaagagagcagggaggaagatattcaaggaaactcgccacccggtgtatagaggtgtaaggaagaggaac |
23266612 |
T |
|
| Q |
124 |
ttagataaatgggtgtgtgaaatgagggaacccaacacaaagaccaggatttggctagggacttttccaacacccgaaatggcagcccgagcccacgatg |
223 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
23266611 |
ttagataaatgggtttgtgaaatgagggaacccaacacgaagactagaatttggctaggaacttttccaacagccgagatggcagcccgagcccacgatg |
23266512 |
T |
|
| Q |
224 |
ttgccgcaatggcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcggcttcctattccagtaacttccgcgataaaagatattca |
323 |
Q |
| |
|
|||| || |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||| | |||||||||||||| |
|
|
| T |
23266511 |
ttgctgcgatggcattgaggggtcgctacgcctgtctcaattttgcagattcggtgtggcggcttcctattccagcaacttcctcaataaaagatattca |
23266412 |
T |
|
| Q |
324 |
aaaggcggctgctgaagctgccgaagcttttagaccagacaagactttaatgattaatgatattgacaccgtcgtacctgtcgcggccacaaaggagttg |
423 |
Q |
| |
|
|||||| ||| | |||| ||||||||||||||||||||||| ||| ||||||||| | ||||| || || ||| |||| | ||||||||||||||| |
|
|
| T |
23266411 |
aaaggcagctacaaaagccgccgaagcttttagaccagacaatactataatgattaccaacattgagactgttgtagctgttgtcgccacaaaggagttg |
23266312 |
T |
|
| Q |
424 |
aatatgttttgtgtggaagtcgaagaagagcaggaaatgttgaatatgccagaattgttgaggaatatggcactaatgtcccctacgcatagctttgagt |
523 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||| || || | ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23266311 |
aatatgttttgtgtggaa---gaagaag---aggaaatgttgaatatgccggagttttggaggaatatggcactaatgtcccctacacatagctttgagt |
23266218 |
T |
|
| Q |
524 |
atcatgatcagtatgaagatattcatgtacaagactttcaagatgatga |
572 |
Q |
| |
|
|||||||||| ||||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
23266217 |
atcatgatcaatatgaagattttcattttcaagactttcaagatgatga |
23266169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 46 - 572
Target Start/End: Complemental strand, 23252158 - 23251635
Alignment:
| Q |
46 |
aacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaa |
145 |
Q |
| |
|
||||| |||||| |||| ||||||||||| || ||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
23252158 |
aacccgaagaagagagcggggaggaagatatttaaggaaactcgtcaccctgtctatagaggtgtgaggaagaggaacttaaataaatgggtttgtgaaa |
23252059 |
T |
|
| Q |
146 |
tgagggaacccaacacaaagaccaggatttggctagggacttttccaacacccgaaatggcagcccgagcccacgatgttgccgcaatggcattgagggg |
245 |
Q |
| |
|
||||||| || |||||||||| |||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
23252058 |
tgagggagccgaacacaaagaataggatttggctaggaacttttccaacagccgagatggcagcccgagcccacgatgttgccgcgatagcattgagggg |
23251959 |
T |
|
| Q |
246 |
ccgctatgcctgtctcaattttgcagactcggtgtggcggcttcctattccagtaacttccgcgataaaagatattcaaaaggcggctgctgaagctgcc |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||| | |||| ||| |
|
|
| T |
23251958 |
ccgctatgcctgtctcaattttgcagactcggtgtggcgccttcctattccagcaacttccgcgataaaagatattcaaaaggcagctacaaaagccgcc |
23251859 |
T |
|
| Q |
346 |
gaagcttttagaccagacaagactttaatgattaatgatattgacaccgtcgtacctgtcgcggccacaaaggagttgaatatgttttgtgtggaagtcg |
445 |
Q |
| |
|
|||||||||||||||||||| |||||||||| | ||| ||||||||||| ||| |||| | || ||| ||||| ||||||||||| |||| ||||||| |
|
|
| T |
23251858 |
gaagcttttagaccagacaatactttaatgaccagtgacattgacaccgttgtagctgttgtcgcaacacaggagctgaatatgtttcgtgttgaagtcg |
23251759 |
T |
|
| Q |
446 |
aagaagagcaggaaatgttgaatatgccagaattgttgaggaatatggcactaatgtcccctacgcatagctttgagtatcatgatcagtatgaagatat |
545 |
Q |
| |
|
|||||| ||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
23251758 |
aagaag---aggaagtgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgggtatcatgatcagtatgaagatat |
23251662 |
T |
|
| Q |
546 |
tcatgtacaagactttcaagatgatga |
572 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
23251661 |
tcatatacaagactttcaagatgatga |
23251635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 43 - 572
Target Start/End: Complemental strand, 23247749 - 23247223
Alignment:
| Q |
43 |
agtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtg |
142 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || |||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
23247749 |
agtaacccgaagaagcgagcagggaggaagatatttaaggaaactcgccacccggtctatagaggtgtgaggaagaggaacttaaataaatgggtttgtg |
23247650 |
T |
|
| Q |
143 |
aaatgagggaacccaacacaaagaccaggatttggctagggacttttccaacacccgaaatggcagcccgagcccacgatgttgccgcaatggcattgag |
242 |
Q |
| |
|
|||||||||| || |||||||||| ||||||||||| || |||||||||||||| || ||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
23247649 |
aaatgagggagccgaacacaaagaataggatttggctgggaacttttccaacaccggagatggctgcccgagcccacgatgttgctgcaatggcattgag |
23247550 |
T |
|
| Q |
243 |
gggccgctatgcctgtctcaattttgcagactcggtgtggcggcttcctattccagtaacttccgcgataaaagatattcaaaaggcggctgctgaagct |
342 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||| ||| | |||| |
|
|
| T |
23247549 |
gggccgctatgcctgtctcaatttctcagactcggtgtggcgccttcctattccagcaacttccgcaataaaagatattcaaaaggcagctacaaaagcg |
23247450 |
T |
|
| Q |
343 |
gccgaagcttttagaccagacaagactttaatgattaatgatattgacaccgtcgtacctgtcgcggccacaaaggagttgaatatgttttgtgtggaag |
442 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||| |||||||||| ||||| ||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
23247449 |
gccgaagcttttagaccagacaatactttaatgactaacaatattgacactatcgtagatgtcgtcgccacaaaggagctgaatatgttttgtgtggaag |
23247350 |
T |
|
| Q |
443 |
tcgaagaagagcaggaaatgttgaatatgccagaattgttgaggaatatggcactaatgtcccctacgcatagctttgagtatcatgatcagtatgaaga |
542 |
Q |
| |
|
| || ||| || |||||||||||||||||||||| |||| |||||||||||| | ||||| ||||| ||||||||||||||||||| ||||||| || |
|
|
| T |
23247349 |
ttgatgaacaggaggaaatgttgaatatgccagagttgtggaggaatatggcgttgatgtcacctacacatagctttgagtatcatg---agtatgacga |
23247253 |
T |
|
| Q |
543 |
tattcatgtacaagactttcaagatgatga |
572 |
Q |
| |
|
||||||||||||||| |||||||||||||| |
|
|
| T |
23247252 |
tattcatgtacaagattttcaagatgatga |
23247223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 64 - 395
Target Start/End: Complemental strand, 23283789 - 23283458
Alignment:
| Q |
64 |
gggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaacccaacacaa |
163 |
Q |
| |
|
|||||||||| || ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
23283789 |
gggaggaagaagtttaaggagactcgccacccggtgtataggggtgtgaggaagaggaacttagataaatgggtttgtgaaatgagggaacccaacaaaa |
23283690 |
T |
|
| Q |
164 |
agaccaggatttggctagggacttttccaacacccgaaatggcagcccgagcccacgatgttgccgcaatggcattgaggggccgctatgcctgtctcaa |
263 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | || ||||| || ||||| ||||| ||||| || |||||||| ||||||||||||||||||||||| |
|
|
| T |
23283689 |
agactaggatttggctagggacttttccaacggctgagatggctgcacgagcacacgacgttgcagccatggcattaaggggccgctatgcctgtctcaa |
23283590 |
T |
|
| Q |
264 |
ttttgcagactcggtgtggcggcttcctattccagtaacttccgc-ga--taaaagatattcaaaaggcggctgctgaagctgccgaagcttttagacca |
360 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | | ||||| || |||||| ||||||| ||| ||||| ||||| ||||| ||||| |||||| |
|
|
| T |
23283589 |
ctttgcagactcggtgtggaggcttcctattcctg---cctccgctgaagcaaaagacattcaaagggcagctgcagaagccgccgaggctttcagacca |
23283493 |
T |
|
| Q |
361 |
gacaagactttaatgattaatgatattgacaccgt |
395 |
Q |
| |
|
|||||||||||||||| ||| || ||||||||||| |
|
|
| T |
23283492 |
gacaagactttaatgactaacgacattgacaccgt |
23283458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 34 - 376
Target Start/End: Complemental strand, 23290132 - 23289790
Alignment:
| Q |
34 |
ttagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaat |
133 |
Q |
| |
|
|||||||| ||| |||||| || | |||||||||||||| || ||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23290132 |
ttagcggcgagttgcccaaaaaaaccagcagggaggaagaagtttaaggagactcgccacccggtgtatagaggtgtgaggaagaggaacttagataaat |
23290033 |
T |
|
| Q |
134 |
gggtgtgtgaaatgagggaacccaacacaaagaccaggatttggctagggacttttccaacacccgaaatggcagcccgagcccacgatgttgccgcaat |
233 |
Q |
| |
|
|||||||||||||||||||||| || | ||||| ||||||||||||||||||||| ||||| |||| ||||| ||||| || ||||| ||||| ||||| |
|
|
| T |
23290032 |
gggtgtgtgaaatgagggaaccaaataagaagactaggatttggctagggacttttgcaacagccgagatggctgcccgtgcacacgacgttgcagcaat |
23289933 |
T |
|
| Q |
234 |
ggcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcggcttcctattccagtaacttccgc-ga--taaaagatattcaaaaggcg |
330 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||| |||| |||||||||||| | | ||||| || |||||| ||||||| ||| |
|
|
| T |
23289932 |
tgcattgaggggccgctacgcctgtctcaactttgcagactcggcgtggaagcttcctattcctg---cctccgctgaagcaaaagacattcaaagggca |
23289836 |
T |
|
| Q |
331 |
gctgctgaagctgccgaagcttttagaccagacaagactttaatga |
376 |
Q |
| |
|
|||| ||||| || || ||||| |||||||||||||||||||||| |
|
|
| T |
23289835 |
gctggagaagccgctgaggctttcagaccagacaagactttaatga |
23289790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 31 - 287
Target Start/End: Complemental strand, 23587291 - 23587035
Alignment:
| Q |
31 |
cgattagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagata |
130 |
Q |
| |
|
||||||||||| | || ||| |||||||| ||||||||||||| |||||||||||||||||||| | |||||||| |||||||||||||||||||||| |
|
|
| T |
23587291 |
cgattagcggcaactaccccgaagaagcgtgcagggaggaagaagttcaaggaaactcgccacccagtctatagaggagtgaggaagaggaacttagata |
23587192 |
T |
|
| Q |
131 |
aatgggtgtgtgaaatgagggaacccaacacaaagaccaggatttggctagggacttttccaacacccgaaatggcagcccgagcccacgatgttgccgc |
230 |
Q |
| |
|
||||||| |||||||||||||| || |||| ||||| | |||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| || |
|
|
| T |
23587191 |
aatgggtttgtgaaatgagggagcctaacaagaagactaagatttggctagggacttttccaactgccgagatggcagcccgtgcccacgatgttgctgc |
23587092 |
T |
|
| Q |
231 |
aatggcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcggct |
287 |
Q |
| |
|
||||||||||||||||||||| || |||||||| ||||||||||| | ||||||||| |
|
|
| T |
23587091 |
aatggcattgaggggccgctacgcttgtctcaactttgcagactcagcgtggcggct |
23587035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 49 - 392
Target Start/End: Complemental strand, 23391586 - 23391243
Alignment:
| Q |
49 |
ccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatga |
148 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||| |||||||||||| | ||||| ||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
23391586 |
ccaaagaagcgtgcagggaggaagaagttcaaggagactcgccacccggtatataggggtgtgaggaaaagaaacttagataaatgggtgtgtgaaatga |
23391487 |
T |
|
| Q |
149 |
gggaacccaacacaaagaccaggatttggctagggacttttccaacacccgaaatggcagcccgagcccacgatgttgccgcaatggcattgaggggccg |
248 |
Q |
| |
|
||||||| || | ||||| | ||||||||||| ||||||||||| | || |||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
23391486 |
gggaaccaaataagaagactaaaatttggctaggcacttttccaactgcggagatggcagcccgagcacatgatgttgccgcaatggcattgaggggccg |
23391387 |
T |
|
| Q |
249 |
ctatgcctgtctcaattttgcagactcggtgtggcggcttcctattccagtaacttccgcgataaaagatattcaaaaggcggctgctgaagctgccgaa |
348 |
Q |
| |
|
||| ||||||||||| ||||||||||| | ||||||||| ||||| || | || | | ||||||||| |||||||||||||| | || || || |
|
|
| T |
23391386 |
ctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaaggcggctgcacaggccgctgag |
23391287 |
T |
|
| Q |
349 |
gcttttagaccagacaagactttaatgattaatgatattgacac |
392 |
Q |
| |
|
||||| |||||||||||||||| ||| | |||||| |||||||| |
|
|
| T |
23391286 |
gctttcagaccagacaagacttcaattactaatgacattgacac |
23391243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 52 - 373
Target Start/End: Complemental strand, 23634304 - 23633983
Alignment:
| Q |
52 |
aagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgaggg |
151 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| || ||||||||| |||| || |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23634304 |
aagaagcgtgcagggaggaagaagttcaaggagacacgccacccggtgtacaggggtgtgaggaggaggaacttagataaatgggtgtgtgaaatgaggg |
23634205 |
T |
|
| Q |
152 |
aacccaacacaaagaccaggatttggctagggacttttccaacacccgaaatggcagcccgagcccacgatgttgccgcaatggcattgaggggccgcta |
251 |
Q |
| |
|
| || |||| ||||| | |||||||||||||||||||||||| |||| |||||||| ||||| || ||||| || ||| ||||||| || || ||| | |
|
|
| T |
23634204 |
agcctaacaagaagactaagatttggctagggacttttccaacggccgagatggcagcacgagcacatgatgtcgcggcattggcattaagaggtcgcaa |
23634105 |
T |
|
| Q |
252 |
tgcctgtctcaattttgcagactcggtgtggcggcttcctattccagtaacttccgcgataaaagatattcaaaaggcggctgctgaagctgccgaagct |
351 |
Q |
| |
|
|||||||| |||||||| ||||| | | ||||||||||||||| | ||| | | || || |||||| |||||| ||||||| ||||||||||| ||| |
|
|
| T |
23634104 |
cgcctgtcttaattttgctgactctgcctcgcggcttcctattcctgccactacagagacaagagatatacaaaagacggctgcagaagctgccgaggct |
23634005 |
T |
|
| Q |
352 |
tttagaccagacaagactttaa |
373 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
23634004 |
ttcagaccagacaagactttaa |
23633983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 48 - 381
Target Start/End: Complemental strand, 23583390 - 23583058
Alignment:
| Q |
48 |
cccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatg |
147 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||| |||||||||||| | ||||| ||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23583390 |
cccaaagaagcgtgcagggaggaagaagttcaaggagactcgccacccggtctataggggtgtaaggaagaggaacttagataaatgggtttgtgaaatg |
23583291 |
T |
|
| Q |
148 |
agggaacccaacacaaagaccaggatttggctagggacttttccaacacccgaaatggcagcccgagcccacgatgttgccgcaatggcattgaggggcc |
247 |
Q |
| |
|
||| | || |||| ||||| | |||||||||||||||||||||||| | || |||||| |||| |||||||||||||| ||||||||||||| ||||| |
|
|
| T |
23583290 |
aggaagcctaacaagaagactaagatttggctagggacttttccaactgcggagatggcaacccgtgcccacgatgttgctgcaatggcattga-gggcc |
23583192 |
T |
|
| Q |
248 |
gctatgcctgtctcaattttgcagactcggtgtggcggcttcctattccagtaacttccgcgataaaagatattcaaaaggcggctgctgaagctgccga |
347 |
Q |
| |
|
|||| ||||||||||| ||||||||||| | |||||||| || | || | |||| | | ||| ||||| |||||||| ||||| || || ||| | |
|
|
| T |
23583191 |
gctacgcctgtctcaactttgcagactcagcatggcggctccccaaacctgcaactactcaggcaaaggatatacaaaaggctgctgcagaggccgccaa |
23583092 |
T |
|
| Q |
348 |
agcttttagaccagacaagactttaatgattaat |
381 |
Q |
| |
|
||||| |||||||||||||||||| ||| |||| |
|
|
| T |
23583091 |
ggctttcagaccagacaagactttattgactaat |
23583058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 52 - 376
Target Start/End: Complemental strand, 23507124 - 23506800
Alignment:
| Q |
52 |
aagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgaggg |
151 |
Q |
| |
|
|||||||| | ||||||||||| ||||||||||||||||||||| ||||||| |||||||||| |||||| |||||||||||||||||||||| || |
|
|
| T |
23507124 |
aagaagcgtggagggaggaagaaattcaaggaaactcgccacccggtgtataggggtgtgaggagtaggaacctagataaatgggtgtgtgaaataagac |
23507025 |
T |
|
| Q |
152 |
aacccaacacaaagaccaggatttggctagggacttttccaacacccgaaatggcagcccgagcccacgatgttgccgcaatggcattgaggggccgcta |
251 |
Q |
| |
|
| || |||| |||||||| |||||||||||| |||||||||||| |||| |||||||| || ||||| |||||||| ||| |||| |||| || || | |
|
|
| T |
23507024 |
agcctaacaaaaagaccaagatttggctaggaacttttccaacagccgagatggcagctcgggcccatgatgttgcggcactggcgttgaaaggtggcga |
23506925 |
T |
|
| Q |
252 |
tgcctgtctcaattttgcagactcggtgtggcggcttcctattccagtaacttccgcgataaaagatattcaaaaggcggctgctgaagctgccgaagct |
351 |
Q |
| |
|
||||||||||| ||||||||||||| | | ||| |||||||| | |||| || || ||||||||| |||||| |||||||||||||||| || || |
|
|
| T |
23506924 |
cgcctgtctcaactttgcagactcggccttgacgctccctattcctgctacttgcgagacaaaagatatacaaaagacggctgctgaagctgctgaggca |
23506825 |
T |
|
| Q |
352 |
tttagaccagacaagactttaatga |
376 |
Q |
| |
|
|| ||||||| ||||||| |||||| |
|
|
| T |
23506824 |
ttcagaccaggcaagactgtaatga |
23506800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 420 - 522
Target Start/End: Complemental strand, 23289731 - 23289629
Alignment:
| Q |
420 |
gttgaatatgttttgtgtggaagtcgaagaagagcaggaaatgttgaatatgccagaattgttgaggaatatggcactaatgtcccctacgcatagcttt |
519 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| |||||||||||| ||| |||| || ||||||||||||||||||||||| ||||| ||| |
|
|
| T |
23289731 |
gttgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgcaagagttgtggaaaaatatggcactaatgtcccctacacatagtttt |
23289632 |
T |
|
| Q |
520 |
gag |
522 |
Q |
| |
|
||| |
|
|
| T |
23289631 |
gag |
23289629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 34 - 296
Target Start/End: Complemental strand, 23594354 - 23594092
Alignment:
| Q |
34 |
ttagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaat |
133 |
Q |
| |
|
||||| || |||| |||||||||||| ||| | || |||| ||||||| ||| |||||||||| ||||| |||||||||| ||||| |||| ||||| |
|
|
| T |
23594354 |
ttagctgcaagtaccccaaagaagcgtgcatgcagaaagaagttcaaggtgacttgccacccgatctataggggtgtgaggagtaggaatttaggtaaat |
23594255 |
T |
|
| Q |
134 |
gggtgtgtgaaatgagggaacccaacacaaagaccaggatttggctagggacttttccaacacccgaaatggcagcccgagcccacgatgttgccgcaat |
233 |
Q |
| |
|
||||||||||||||||||| || |||| | ||| | ||| |||||||| |||||||||| | || |||| ||| |||||||| ||||| || || | |
|
|
| T |
23594254 |
gggtgtgtgaaatgagggagcctaacaagatgactaagatatggctaggaacttttccaatggctgagatggaagcacgagcccatgatgtcgcgacatt |
23594155 |
T |
|
| Q |
234 |
ggcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcggcttcctattcc |
296 |
Q |
| |
|
||||||||| || | || || |||||||| ||||||||||| | |||||||| | |||||| |
|
|
| T |
23594154 |
ggcattgagaggttgttacgcttgtctcaactttgcagactctgcatggcggctccttattcc |
23594092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 420 - 515
Target Start/End: Complemental strand, 23283391 - 23283296
Alignment:
| Q |
420 |
gttgaatatgttttgtgtggaagtcgaagaagagcaggaaatgttgaatatgccagaattgttgaggaatatggcactaatgtcccctacgcatag |
515 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| ||||||||||| |||| ||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
23283391 |
gttgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagagatgtggaggaatatggcgttaatgtcccctacacatag |
23283296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 464 - 567
Target Start/End: Complemental strand, 23391174 - 23391074
Alignment:
| Q |
464 |
tgaatatgccagaattgttgaggaatatggcactaatgtcccctacgcatagctttgagtatcatgatcagtatgaagatattcatgtacaagactttca |
563 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||| ||||| ||||||| || |||| ||| | |||||| |||||||||| ||||||||||| |
|
|
| T |
23391174 |
tgaacatgccagagttgttgaggaatatggcactaatgtctcctacacatagctctgggtataatg---aatatgaaaatattcatgttcaagactttca |
23391078 |
T |
|
| Q |
564 |
agat |
567 |
Q |
| |
|
|||| |
|
|
| T |
23391077 |
agat |
23391074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 220 - 383
Target Start/End: Complemental strand, 23506794 - 23506631
Alignment:
| Q |
220 |
gatgttgccgcaatggcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcggcttcctattccagtaacttccgcgataaaagata |
319 |
Q |
| |
|
||||| || ||| ||||||| || || ||| | ||||||||||| ||||||||||||| | ||||||||||||||| | ||| | || || ||||| |
|
|
| T |
23506794 |
gatgtcgcggcattggcattaagaggtcgcaacgcctgtctcaactttgcagactcggcctcgcggcttcctattcctgccactaaagagacaagagata |
23506695 |
T |
|
| Q |
320 |
ttcaaaaggcggctgctgaagctgccgaagcttttagaccagacaagactttaatgattaatga |
383 |
Q |
| |
|
| ||||| |||||||| |||||| | || ||||| ||||||||||||||||||| || |||||| |
|
|
| T |
23506694 |
tacaaaacgcggctgcagaagctactgaggctttcagaccagacaagactttaacgactaatga |
23506631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 522
Target Start/End: Complemental strand, 23593082 - 23593009
Alignment:
| Q |
449 |
aagagcaggaaatgttgaatatgccagaattgttgaggaatatggcactaatgtcccctacgcatagctttgag |
522 |
Q |
| |
|
||||| ||||| ||||||| || ||||| | ||||||||||||||| |||||||||||||| |||||| ||||| |
|
|
| T |
23593082 |
aagaggaggaagtgttgaacattccagagtcgttgaggaatatggctctaatgtcccctacacatagcgttgag |
23593009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 518
Target Start/End: Complemental strand, 23633872 - 23633835
Alignment:
| Q |
481 |
ttgaggaatatggcactaatgtcccctacgcatagctt |
518 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
23633872 |
ttgaggaatatggctctaatgtcccctacacatagctt |
23633835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 3996440 - 3996385
Alignment:
| Q |
172 |
atttggctagggacttttccaacacccgaaatggcagcccgagcccacgatgttgc |
227 |
Q |
| |
|
||||||||||| |||| |||||||||||| |||||||| |||||||| || ||||| |
|
|
| T |
3996440 |
atttggctaggcacttatccaacacccgagatggcagctcgagcccatgacgttgc |
3996385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University